Evidence map›Paper›PMID 36514661›Full record

ArticleCureus2022

An Early and Preliminary Assessment of the Clinical Severity of the Emerging SARS-CoV-2 Omicron Variants in Maharashtra, India.

Rajesh P Karyakarte, Rashmita Das, Nyabom Taji, Sushma Yanamandra, Smriti Shende, Suvarna Joshi, Bhagyashree Karekar, Reshma Bawale, Rahul Tiwari, Madhuri Jadhav and 12 more

Open access · diamondAbstract read
In one paragraph

Article in Cureus, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 25 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. SARS-CoV-2 evolution in the Omicron era.Nature microbiology · 2023
    Review
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 1 institution in 1 country.

Rajesh P KaryakarteMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Rashmita DasMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Nyabom TajiMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Sushma YanamandraMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Smriti ShendeMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Suvarna JoshiMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Bhagyashree KarekarMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Reshma BawaleMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Rahul TiwariMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Madhuri JadhavMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Shivani SakalkarMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Geetanjali ChaudhariMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Srushti RaneMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Jeanne AgarasenMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Praveena PillaiMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Sonali DudhateMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Priyanka ChandankhedeMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Rutika LabhshetwarMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Yogita GadiyalMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Mansi RajmaneMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Savita MukadeMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
Preeti KulkarniMicrobiology, B. J. Government Medical College & Sassoon General Hospitals, Pune, IND.
B. J. Medical College & Sassoon Hospital · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe SARS-CoV-2 Omicron variants BA.2.74, BA.2.75, and BA.2.76 have appeared recently in India and have already spread to over 40 countries. They have acquired additional mutations in their spike protein compared to BA.2, branching away on the SARS-CoV-2 phylogenetic tree. These added mutations have raised concerns about the impact on viral pathogenicity, transmissibility, and immune evasion properties of the new variants. MATERIAL AND

methodsA total of 990 Reverse Transcriptase-Polymerase Chain Reaction (RT-PCR) positive SARS-CoV-2 samples, with a cycle threshold value (Ct) less than 25, were processed for SARS-CoV-2 whole genome sequencing between June 3, 2022 to August 7, 2022. All corresponding demographic and clinical data were recorded and analyzed using Microsoft® Excel.

resultsOut of 990 samples sequenced, BA.2.75 (23.03%) was the predominant Omicron sublineage, followed by BA.2.38 (21.01%), BA.5 (9.70%), BA.2 (9.09%), BA.2.74 (8.89%) and BA.2.76 (5.56%). A total of 228 cases of BA.2.74, BA.2.75, and BA.2.76 were contacted by telephone, of which 215 (94.30%) were symptomatic with mild symptoms, and 13 (5.70%) had no symptoms. Fever (82.02%) was the most common symptom, followed by cough (49.12%), cold (35.97%), fatigue (27.19%), headache (21.05%), and myalgia (20.61%). Of the 228 cases, 195 (85.53%) cases recovered at home, and 33 (14.47%) required institutional quarantine. Recovery with conservative treatment was observed in 92.98% of cases, while 4.83% required additional oxygen therapy. Only three (1.32%) cases had poor outcomes resulting in death, and the remaining 225 (98.68%) survived. Among the 228 cases, 219 (96.05%) cases were vaccinated with the COVID-19 vaccine; of these, 72.60% had received both doses, 26.03% had also received the precautionary booster dose, while 1.37% were incompletely vaccinated with a single dose of vaccine.

conclusionThe current study indicates that the three BA.2 sublineages are causing mild disease in India. However, BA.2.75 has key mutations that are notable for accelerated growth and transmission and require close and effective monitoring.

Indexed as

ba.2.74ba.2.75ba.2.76omicronsars-cov-2 whole-genome sequencing

Identifiers

PMID36514661
PMCPMC9741711
OpenAlexW4308935885

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.