Evidence map›Paper›PMID 36513676›Full record

ArticleNature communications2022

Genome of Paspalum vaginatum and the role of trehalose mediated autophagy in increasing maize biomass.

Guangchao Sun, Nishikant Wase, Shengqiang Shu, Jerry Jenkins, Bangjun Zhou, J Vladimir Torres-Rodríguez, Cindy Chen, Laura Sandor, Chris Plott, Yuko Yoshinga and 17 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
15.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 39 citations in OpenAlex.

  1. Genome-Wide Identification and Expression Analysis of theCurrent issues in molecular biology · 2026
    Article
  2. A Salt-ResponsiveInternational journal of molecular sciences · 2026
    Article
  3. Article
  4. Genetic and genomic resources for turfgrasses: status, applications, and prospects.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Review
  5. Review
  6. Forage Crop Research in the Modern Age.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Autophagy in plants.Autophagy reports · 2024
    Review
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors at 4 institutions in 1 country.

Guangchao SunQuantitative Life Sciences Initiative, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.
Nishikant WaseCenter for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.ORCID 0000-0002-8955-3300
Shengqiang ShuDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Lawrence, CA, 94720, USA.ORCID 0000-0002-4336-8994
Jerry JenkinsHudsonAlpha Institute for Biotechnology, Huntsville, AL, 35806, USA.ORCID 0000-0002-7943-3997
Bangjun ZhouCenter for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.
J Vladimir Torres-RodríguezQuantitative Life Sciences Initiative, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.
Cindy ChenDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Lawrence, CA, 94720, USA.
Laura SandorDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Lawrence, CA, 94720, USA.
Chris PlottHudsonAlpha Institute for Biotechnology, Huntsville, AL, 35806, USA.ORCID 0000-0002-0109-5174
Yuko YoshingaDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Lawrence, CA, 94720, USA.
Christopher DaumDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Lawrence, CA, 94720, USA.ORCID 0000-0003-3895-5892
Peng QiInstitute of Plant Breeding, Genetics and Genomics, Department of Crop and Soil Sciences, University of Georgia, Athens, GA, 30602, USA.
Kerrie BarryDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Lawrence, CA, 94720, USA.
Anna LipzenDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Lawrence, CA, 94720, USA.
Luke BerryCenter for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.
Connor PedersenCenter for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.
Thomas GottillaInstitute of Plant Breeding, Genetics and Genomics, Department of Crop and Soil Sciences, University of Georgia, Athens, GA, 30602, USA.
Ashley FoltzQuantitative Life Sciences Initiative, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.
Huihui YuCenter for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.
Ronan O'MalleyDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Lawrence, CA, 94720, USA.ORCID 0000-0002-4907-0339
Chi ZhangCenter for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.
Katrien M DevosInstitute of Plant Breeding, Genetics and Genomics, Department of Crop and Soil Sciences, University of Georgia, Athens, GA, 30602, USA.
Brandi SigmonDepartment of Plant Pathology, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.ORCID 0000-0003-3914-6894
Bin YuCenter for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.ORCID 0000-0002-4763-177X
Toshihiro ObataCenter for Plant Science Innovation, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA.ORCID 0000-0001-8931-7722
Jeremy SchmutzDepartment of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Lawrence, CA, 94720, USA. jschmutz@hudsonalpha.org.ORCID 0000-0001-8062-9172
James C SchnableQuantitative Life Sciences Initiative, University of Nebraska-Lincoln, Lincoln, NE, 68588, USA. schnable@unl.edu.ORCID 0000-0001-6739-5527
University of Nebraska–Lincoln · USLawrence Berkeley National Laboratory · USUniversity of Georgia · USHudsonAlpha Institute for Biotechnology · US

Funding

UNMC Structural Biology CoreP20GM103427 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI PAUL L SORGEN · 2012 to 2026
$59.2M
UNMC/EPPLEY CANCER CENTER SUPPORT GRANTP30CA036727 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Joann B. Sweasy · 1985 to 2026
$55.0M
UNMC Histology/Imaging and Creighton University Imaging Core FacilityP30GM110768 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI WALSH, EDWARD J · 2014 to 2018
$5.1M
Understand the function of the MOS4-associated complex in microRNA biogenesisR01GM127414 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI YU, BIN · 2018 to 2022
$1.6M
NCI NIH HHS P30 CA036727NIGMS NIH HHS P20 GM103427NIGMS NIH HHS P30 GM110768NIGMS NIH HHS R01 GM127414
6 · The paper itself

Abstract

A number of crop wild relatives can tolerate extreme stress to a degree outside the range observed in their domesticated relatives. However, it is unclear whether or how the molecular mechanisms employed by these species can be translated to domesticated crops. Paspalum (Paspalum vaginatum) is a self-incompatible and multiply stress-tolerant wild relative of maize and sorghum. Here, we describe the sequencing and pseudomolecule level assembly of a vegetatively propagated accession of P. vaginatum. Phylogenetic analysis based on 6,151 single-copy syntenic orthologues conserved in 6 related grass species places paspalum as an outgroup of the maize-sorghum clade. In parallel metabolic experiments, paspalum, but neither maize nor sorghum, exhibits a significant increase in trehalose when grown under nutrient-deficit conditions. Inducing trehalose accumulation in maize, imitating the metabolic phenotype of paspalum, results in autophagy dependent increases in biomass accumulation.

Indexed as

PaspalumSorghumAutophagyBiomassPhylogenyTrehaloseZea maysTrehalose

Identifiers

PMID36513676
PMCPMC9747981
OpenAlexW4311250088

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.