Evidence map›Paper›PMID 36513616›Full record

ArticleOrthopaedic surgery2023

Mining Potential Drug Targets for Osteoporosis Based on CeRNA Network.

Zheng Wang, Xiao-Fei Zhang, Mao-Peng Wang, Shuo Yan, Zheng-Xu Dai, Qing-Hang Qian, Jie Zhao, Xin-Long Ma, Bing Li, Jun Liu

Open access · goldAbstract read
In one paragraph

Article in Orthopaedic surgery, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Zheng WangDepartment of Joint Surgery, Tianjin Hospital, Tianjin, China.ORCID https://orcid.org/0000-0002-1852-1993
Xiao-Fei ZhangDepartment of Orthopaedics, Tianjin Medical University General Hospital, Tianjin, China.ORCID https://orcid.org/0000-0001-8090-1201
Mao-Peng WangDepartment of Joint Surgery, Tianjin Hospital, Tianjin, China.
Shuo YanDepartment of Joint Surgery, Tianjin Hospital, Tianjin, China.
Zheng-Xu DaiDepartment of Joint Surgery, Tianjin Hospital, Tianjin, China.
Qing-Hang QianGraduate School of Tianjin Medical University, Tianjin Medical University, Tianjin, China.
Jie ZhaoDepartment of Joint Surgery, Tianjin Hospital, Tianjin, China.
Xin-Long MaDepartment of Orthopaedics, Tianjin Medical University General Hospital, Tianjin, China.
Bing LiDepartment of Joint Surgery, Tianjin Hospital, Tianjin, China.
Jun LiuDepartment of Joint Surgery, Tianjin Hospital, Tianjin, China.ORCID https://orcid.org/0000-0002-1617-6030
Tianjin Hospital · CNTianjin Medical University General Hospital · CNTianjin Medical University · CN

Funding

Foundation of Tianjin Health Commission ZC20192National Natural Science Foundation of China 82102639Natural Science Foundation of Tianjin City 20JCQNJC01170Tianjin Health Science and Technology Project TJWJ2021QN047Tianjin Science and Technology Program 21JCZDJC01000
6 · The paper itself

Abstract

objectiveTo identify key pathological hub genes, micro RNAs (miRNAs), and circular RNAs (circRNAs) of osteoporosis (OP) and construct their ceRNA network in an effort to explore the potential biomarkers and drug targets for OP therapy.

methodsGSE7158, GSE201543, and GSE161361 microarray datasets were downloaded from Gene Expression Omnibus (GEO) database. Differentially expressed genes (DEGs) were identified by comparing OP patients with healthy controls and hub genes were screened by machine learning algorithms. Target miRNAs and circRNAs were predicted by FunRich and circbank, then ceRNA network were constructed by Cytoscape. Pathways affecting OP were identified by functional enrichment analysis. The hub genes were verified by receiver operating characteristic (ROC) curve and real time quantitative PCR (RT-qPCR). Potential drug molecules related to OP were predicted by DSigDB database and molecular docking was analyzed by autodock vina software.

resultsA total of 179 DEGs were identified. By combining three machine learning algorithms, BAG2, MME, SLC14A1, and TRIM44 were identified as hub genes. Three OP-associated target miRNAs and 362 target circRNAs were predicted to establish ceRNA network. The ROC curves showed that these four hub genes had good diagnostic performance and their differential expression was statistically significant in OP animal model. Benzo[a]pyrene was predicted which could successfully bind to protein receptors related to the hub genes and it was served as the potential drug molecules.

conclusionAn mRNA-miRNA-circRNA network is reported, which provides new ideas for exploring the pathogenesis of OP. Benzo[a]pyrene, as potential drug molecules for OP, may provide guidance for the clinical treatment.

Indexed as

MicroRNAsOsteoporosisAnimalsBenzo(a)pyreneMolecular Docking SimulationRNA, CircularBenzo(a)pyreneMicroRNAsRNA, CircularCircular RNACompeting Endogenous NetworkDrugsMachine LearningMicroRNAOsteoporosis

Identifiers

PMID36513616
PMCPMC10157711
OpenAlexW4311307788

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.