Evidence map›Paper›PMID 36511698›Full record

ArticleJournal of virology2023

Characterization of a Novel CD4 Mimetic Compound YIR-821 against HIV-1 Clinical Isolates.

Kaho Matsumoto, Takeo Kuwata, William D Tolbert, Jonathan Richard, Shilei Ding, Jérémie Prévost, Shokichi Takahama, George P Judicate, Takamasa Ueno, Hirotomo Nakata and 7 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 3 countries.

Kaho MatsumotoJoint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan.ORCID 0000-0003-4717-1432
Takeo KuwataJoint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan.
William D TolbertInfectious Disease Division, Department of Medicine, Uniformed Services University of the Health Sciences, Bethesda, Maryland, USA.
Jonathan RichardCentre de Recherche du CHUM (CRCHUM), Montreal, Quebec, Canada.
Shilei DingCentre de Recherche du CHUM (CRCHUM), Montreal, Quebec, Canada.
Jérémie PrévostCentre de Recherche du CHUM (CRCHUM), Montreal, Quebec, Canada.
Shokichi TakahamaLaboratory of Immunosenescence, Center for Vaccine and Adjuvant Research, National Institutes of Biomedical Innovation, Health and Nutrition, Osaka, Japan.
George P JudicateJoint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan.
Takamasa UenoJoint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan.ORCID 0000-0003-4852-4236
Hirotomo NakataDepartment of Hematology, Rheumatology, and Infectious Diseases, Graduate School of Medical Sciences, Faculty of Life Sciences, Kumamoto University, Kumamoto, Japan.
Takuya KobayakawaInstitute of Biomaterials and Bioengineering, Tokyo Medical and Dental University, Tokyo, Japan.
Kohei TsujiInstitute of Biomaterials and Bioengineering, Tokyo Medical and Dental University, Tokyo, Japan.
Hirokazu TamamuraInstitute of Biomaterials and Bioengineering, Tokyo Medical and Dental University, Tokyo, Japan.
Amos B SmithDepartment of Chemistry, School of Arts and Sciences, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Marzena PazgierInfectious Disease Division, Department of Medicine, Uniformed Services University of the Health Sciences, Bethesda, Maryland, USA.ORCID 0000-0003-0594-5057
Andrés FinziCentre de Recherche du CHUM (CRCHUM), Montreal, Quebec, Canada.ORCID 0000-0002-4992-5288
Shuzo MatsushitaJoint Research Center for Human Retrovirus Infection, Kumamoto University, Kumamoto, Japan.ORCID 0000-0002-9649-8821
Kumamoto University · JPCentre Hospitalier de l’Université de Montréal · CATokyo Medical and Dental University · JPUniformed Services University of the Health Sciences · USNational Institute of Biomedical Innovation, Health and Nutrition · JPUniversity of Pennsylvania · US

Funding

Understanding Envelope Function in HIV-1 Infection: The Design, Synthesis and Validation of Small Molecule HIV-1 Env InhibitorsP01GM056550 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ABRAMS, CAMERON F · 1997 to 2018
$31.2M
ERASE HIV: Enterprise for Research and Advancements to Stop and Eradicate HIVUM1AI164562 · NIAID · EMORY UNIVERSITY · PI Deanna A Kulpa, Mirko Paiardini · 2021 to 2026
$30.0M
Understanding Envelope Function in HIV-1 Infection: The Design, Synthesis and Validation of Small Molecule HIV-1 Env InhibitorsP01AI150471 · NIAID · DREXEL UNIVERSITY · PI HENDRICKSON, WAYNE A. · 2019 to 2022
$7.8M
Unlocking Envelope: A New Strategy for a Functional Cure Through Antibody-Dependent Cell-Mediated CytotoxicityR01AI129769 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI PAZGIER, MARZENA ELZBIETA · 2017 to 2021
$2.3M
NIAID NIH HHS P01 AI150471NIAID NIH HHS R01 AI129769NIAID NIH HHS UM1 AI164562NIGMS NIH HHS P01 GM056550
6 · The paper itself

Abstract

Small CD4-mimetic compound (CD4mc), which inhibits the interaction between gp120 with CD4, acts as an entry inhibitor and induces structural changes in the HIV-1 envelope glycoprotein trimer (Env) through its insertion within the Phe43 cavity of gp120. We recently developed YIR-821, a novel CD4mc, that has potent antiviral activity and lower toxicity than the prototype NBD-556. To assess the possibility of clinical application of YIR-821, we tested its antiviral activity using a panel of HIV-1 pseudoviruses from different subtypes. YIR-821 displayed entry inhibitor activity against 53.5% (21/40) of the pseudoviruses tested and enhanced neutralization mediated by coreceptor binding site (CoRBS) antibodies in 50% (16/32) of these. Furthermore, when we assessed the antiviral effects using a panel of pseudoviruses and autologous plasma IgG, enhancement of antibody-mediated neutralization activity was observed for 48% (15/31) of subtype B strains and 51% (28/55) of non-B strains. The direct antiviral activity of YIR-821 as an entry inhibitor was observed in 53% of both subtype B (27/51) and non-B subtype (40/75) pseudoviruses. Enhancement of antibody-dependent cellular cytotoxicity was also observed with YIR-821 for all six selected clinical isolates, as well as for the transmitted/founder (T/F) CH58 virus-infected cells. The sequence diversity in the CD4 binding site as well as other regions, such as the gp120 inner domain layers or gp41, may be involved in the multiple mechanisms related to the sensitive/resistant phenotype of the virus to YIR-821. Our findings may facilitate the clinical application of YIR-821.

Indexed as

HIV-1HIV Fusion InhibitorsHIV InfectionsAnimalsCD4 AntigensHIV AntibodiesHIV Envelope Protein gp120Immunoglobulin GMacaca mulattaCD4 AntigensHIV AntibodiesHIV Envelope Protein gp120HIV Fusion InhibitorsImmunoglobulin GADCCCD4mcCD4mimicclinical strainconformationentry inhibitionenvelopeenvelope conformationHIV-1monoclonal antibodymutationneutralizationnon-B subtypesnon-subtype Bplasma IgGsubtype B

Identifiers

PMID36511698
PMCPMC9888228
OpenAlexW4311288372

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.