Evidence map›Paper›PMID 36511224›Full record

ArticleThe Biochemical journal2023

Construction of mouse cochlin mutants with different GAG-binding specificities and their use for immunohistochemistry.

Karin Murakami, Ryo Tamura, Sanae Ikehara, Hayato Ota, Tomomi Ichimiya, Naoki Matsumoto, Hisahiro Matsubara, Shoko Nishihara, Yuzuru Ikehara, Kazuo Yamamoto

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Karin MurakamiDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan.
Ryo TamuraDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan.
Sanae IkeharaGraduate School of Medicine, Chiba University, Chiba, Chiba, Japan.
Hayato OtaDepartment of Bioinformatics, Graduate School of Engineering, Soka University, Hachioji, Tokyo, Japan.
Tomomi IchimiyaDepartment of Bioinformatics, Graduate School of Engineering, Soka University, Hachioji, Tokyo, Japan.
Naoki MatsumotoDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan.
Hisahiro MatsubaraGraduate School of Medicine, Chiba University, Chiba, Chiba, Japan.
Shoko NishiharaDepartment of Bioinformatics, Graduate School of Engineering, Soka University, Hachioji, Tokyo, Japan.
Yuzuru IkeharaGraduate School of Medicine, Chiba University, Chiba, Chiba, Japan.
Kazuo YamamotoDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan.ORCID 0000-0001-7466-2443
The University of Tokyo · JPChiba University · JPSoka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Glycosaminoglycan (GAG) is a polysaccharide present on the cell surface as an extracellular matrix component, and is composed of repeating disaccharide units consisting of an amino sugar and uronic acid except in the case of the keratan sulfate. Sulfated GAGs, such as heparan sulfate, heparin, and chondroitin sulfate mediate signal transduction of growth factors, and their functions vary with the type and degree of sulfated modification. We have previously identified human and mouse cochlins as proteins that bind to sulfated GAGs. Here, we prepared a recombinant cochlin fused to human IgG-Fc or Protein A at the C-terminus as a detection and purification tag and investigated the ligand specificity of cochlin. We found that cochlin can be used as a specific probe for highly sulfated heparan sulfate and chondroitin sulfate E. We then used mutant analysis to identify the mechanism by which cochlin recognizes GAGs and developed a GAG detection system using cochlin. Interestingly, a mutant lacking the vWA2 domain bound to various types of GAGs. The N-terminal amino acid residues of cochlin contributed to its binding to heparin. Pathological specimens from human myocarditis patients were stained with a cochlin-Fc mutant. The results showed that both tryptase-positive and tryptase-negative mast cells were stained with this mutant. The identification of detailed modification patterns of GAGs is an important method to elucidate the molecular mechanisms of various diseases. The method developed for evaluating the expression of highly sulfated GAGs will help understand the biological and pathological importance of sulfated GAGs in the future.

Indexed as

Chondroitin SulfatesExtracellular Matrix ProteinsHeparan SulfateAnimalsBiomarkers, TumorCalcium-Binding ProteinsHumansImmunohistochemistryIntercellular Signaling Peptides and ProteinsMiceRecombinant ProteinsTryptasesBiomarkers, TumorCalcium-Binding Proteinschondroitin sulfate E hexasaccharideChondroitin SulfatesCoch protein, mouseExtracellular Matrix ProteinsHeparan SulfateIntercellular Signaling Peptides and ProteinsRecombinant ProteinsTryptasesVWA2 protein, humanbiotechnologyglycobiologyglycosaminoglycanspathology

Identifiers

PMID36511224
PMCPMC9987951
OpenAlexW4311236068

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.