Evidence map›Paper›PMID 36510135›Full record

ArticleBMC microbiology2022

RpoN is required for the motility and contributes to the killing ability of Plesiomonas shigelloides.

Junxiang Yan, Xueqian Guo, Jinghao Li, Yuehua Li, Hongmin Sun, Ang Li, Boyang Cao

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Unveiling the Functions of Two RpoNs inInternational journal of molecular sciences · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Transcriptome Analysis Reveals the Effect of PdhR inInternational journal of molecular sciences · 2023
    Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Junxiang YanTEDA Institute of Biological Sciences and Biotechnology, Nankai University, No. 23, Hongda StreetTianjin Economic and Technological Development Area, Tianjin, 300457, China.
Xueqian GuoTEDA Institute of Biological Sciences and Biotechnology, Nankai University, No. 23, Hongda StreetTianjin Economic and Technological Development Area, Tianjin, 300457, China.
Jinghao LiTEDA Institute of Biological Sciences and Biotechnology, Nankai University, No. 23, Hongda StreetTianjin Economic and Technological Development Area, Tianjin, 300457, China.
Yuehua LiTEDA Institute of Biological Sciences and Biotechnology, Nankai University, No. 23, Hongda StreetTianjin Economic and Technological Development Area, Tianjin, 300457, China.
Hongmin SunTEDA Institute of Biological Sciences and Biotechnology, Nankai University, No. 23, Hongda StreetTianjin Economic and Technological Development Area, Tianjin, 300457, China.
Ang LiState Key Laboratory of Medicinal Chemical Biology, College of Pharmacy and Tianjin Key Laboratory of Molecular Drug Research, Nankai University, Haihe Education Park, 38 Tongyan Road, Tianjin, 300353, China.
Boyang CaoTEDA Institute of Biological Sciences and Biotechnology, Nankai University, No.23, Hongda StreetTianjin Economic and Technological Development Area, Tianjin, 300457, China. boyangcao@nankai.edu.cn.
Nankai University · CNTianjin Economic-Technological Development Area · CNState Key Laboratory of Medicinal Chemical Biology

Funding

National Key Programs for Infectious Diseases of China 2017ZX10303405-001
6 · The paper itself

Abstract

backgroundRpoN, also known as σ

resultsTo identify pathways controlled by RpoN, RNA sequencing (RNA-Seq) of the WT and the rpoN deletion strain was carried out for comparison. The RNA-seq results showed that RpoN regulates ~ 13.2% of the P. shigelloides transcriptome, involves amino acid transport and metabolism, glycerophospholipid metabolism, pantothenate and CoA biosynthesis, ribosome biosynthesis, flagellar assembly and bacterial secretion system. Furthermore, we verified the results of RNA-seq using quantitative real-time reverse transcription PCR, which indicated that the absence of rpoN caused downregulation of more than half of the polar and lateral flagella genes in P. shigelloides, and the ΔrpoN mutant was also non-motile and lacked flagella. In the present study, the ability of the ΔrpoN mutant to kill E. coli MG1655 was reduced by 54.6% compared with that of the WT, which was consistent with results in RNA-seq, which showed that the type II secretion system (T2SS-2) genes and the type VI secretion system (T6SS) genes were repressed. By contrast, the expression of type III secretion system genes was largely unchanged in the ΔrpoN mutant transcriptome and the ability of the ΔrpoN mutant to infect Caco-2 cells was also not significantly different compared with the WT.

conclusionsWe showed that RpoN is required for the motility and contributes to the killing ability of P. shigelloides and positively regulates the T6SS and T2SS-2 genes.

Indexed as

Gene Expression Regulation, BacterialPlesiomonasBacterial ProteinsCaco-2 CellsEscherichia coliHumansRNA Polymerase Sigma 54Bacterial ProteinsRNA Polymerase Sigma 54Killing abilityMotilityPlesiomonas shigelloidesRNA sequencingRpoNT2SS-2T6SS

Identifiers

PMID36510135
PMCPMC9743648
OpenAlexW4311666038

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.