Evidence map›Paper›PMID 36508994›Full record

ArticleBioorganic & medicinal chemistry2023

Homopurine guanine-rich sequences in complex with N-methyl mesoporphyrin IX form parallel G-quadruplex dimers and display a unique symmetry tetrad.

Ming Ye, Erin V Chen, Shawn H Pfeil, Kailey N Martin, Tamanaa Atrafi, Sara Yun, Zahara Martinez, Liliya A Yatsunyk

Erratum issuedAbstract read
In one paragraph

Article in Bioorganic & medicinal chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Ming YeDepartment of Chemistry and Biochemistry, Swarthmore College, Swarthmore, PA 19081, United States.
Erin V ChenDepartment of Chemistry and Biochemistry, Swarthmore College, Swarthmore, PA 19081, United States.
Shawn H PfeilDepartment of Physics, West Chester University, West Chester, PA 19383, United States.
Kailey N MartinDepartment of Chemistry and Biochemistry, Swarthmore College, Swarthmore, PA 19081, United States.
Tamanaa AtrafiDepartment of Chemistry and Biochemistry, Swarthmore College, Swarthmore, PA 19081, United States.
Sara YunDepartment of Chemistry and Biochemistry, Swarthmore College, Swarthmore, PA 19081, United States.
Zahara MartinezDepartment of Chemistry and Biochemistry, Swarthmore College, Swarthmore, PA 19081, United States.
Liliya A YatsunykDepartment of Chemistry and Biochemistry, Swarthmore College, Swarthmore, PA 19081, United States. Electronic address: lyatsun1@swarthmore.edu.

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI STEVEN E EALICK · 2018 to 2026
$34.2M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
Deciphering the structure and dynamics of non-canonical DNA implicated in cancerR15CA253134 · NCI · SWARTHMORE COLLEGE · PI YATSUNYK, LILIYA A · 2020 to 2020
$432k
NCI NIH HHS R15 CA253134NIGMS NIH HHS P30 GM124165NIH HHS S10 OD021527
6 · The paper itself

Abstract

DNA can fold into G-quadruplexes (GQs), non-canonical secondary structures formed by π-π stacking of G-tetrads. GQs are important in many biological processes, which makes them promising therapeutic targets. We identified a 42-nucleotide long, purine-only G-rich sequence from human genome, which contains eight G-stretches connected by A and AAAA loops. We divided this sequence into five unique segments, four guanine stretches each, named GA1-5. In order to investigate the role of adenines in GQ structure formation, we performed biophysical and X-ray crystallographic studies of GA1-5 and their complexes with a highly selective GQ ligand, N-methyl mesoporphyrin IX (NMM). Our data indicate that all variants form parallel GQs whose stability depends on the number of flexible AAAA loops. GA1-3 bind NMM with 1:1 stoichiometry. The K

Indexed as

G-QuadruplexesDNAGuanineHumansMesoporphyrinsNucleic Acid ConformationDNAGuaninemesoporphyrin IXMesoporphyrinsBinding constantG-quadruplexHomopurine sequencesN-methyl mesoporphyrin IXSymmetry tetradX-ray crystallography

Identifiers

PMID36508994
PMCPMC9812923

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.