Evidence map›Paper›PMID 36508422›Full record

ArticlePloS one2022

Pterin-based small molecule inhibitor capable of binding to the secondary pocket in the active site of ricin-toxin A chain.

Ryota Saito, Masaru Goto, Shun Katakura, Taro Ohba, Rena Kawata, Kazuki Nagatsu, Shoko Higashi, Kaede Kurisu, Kaori Matsumoto, Kouta Ohtsuka

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Ryota SaitoDepartment of Chemistry, Faculty of Science, Toho University, Funabashi, Chiba, Japan.ORCID 0000-0003-4289-7891
Masaru GotoDepartment of Molecular Bioscience, Faculty of Science, Toho University, Funabashi, Chiba, Japan.
Shun KatakuraDepartment of Chemistry, Faculty of Science, Toho University, Funabashi, Chiba, Japan.
Taro OhbaDepartment of Molecular Bioscience, Faculty of Science, Toho University, Funabashi, Chiba, Japan.
Rena KawataDepartment of Molecular Bioscience, Faculty of Science, Toho University, Funabashi, Chiba, Japan.
Kazuki NagatsuDepartment of Molecular Bioscience, Faculty of Science, Toho University, Funabashi, Chiba, Japan.
Shoko HigashiDepartment of Chemistry, Faculty of Science, Toho University, Funabashi, Chiba, Japan.
Kaede KurisuDepartment of Chemistry, Faculty of Science, Toho University, Funabashi, Chiba, Japan.
Kaori MatsumotoDepartment of Chemistry, Faculty of Science, Toho University, Funabashi, Chiba, Japan.
Kouta OhtsukaDepartment of Chemistry, Faculty of Science, Toho University, Funabashi, Chiba, Japan.
Toho University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Ricin toxin A chain (RTA), which depurinates an adenine base at a specific region of the ribosome leading to death, has two adjacent specificity pockets in its active site. Based on this structural information, many attempts have been made to develop small-molecule RTA inhibitors that simultaneously block the two pockets. However, no attempt has been successful. In the present study, we synthesized pterin-7-carboxamides with tripeptide pendants and found that one of them interacts with both pockets simultaneously to exhibit good RTA inhibitory activity. X-ray crystallographic analysis of the RTA crystal with the new inhibitor revealed that the conformational change of Tyr80 is an important factor that allows the inhibitors to plug the two pockets simultaneously.

Indexed as

RicinCatalytic DomainCrystallography, X-RayPterinsRibosomesPterinsRicin

Identifiers

PMID36508422
PMCPMC9744275
OpenAlexW4311180469

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.