Evidence map›Paper›PMID 36507179›Full record

ArticleChemical science2022

Insights into the importance of WPD-loop sequence for activity and structure in protein tyrosine phosphatases.

Ruidan Shen, Rory M Crean, Keith J Olsen, Marina Corbella, Ana R Calixto, Teisha Richan, Tiago A S Brandão, Ryan D Berry, Alex Tolman, J Patrick Loria and 3 more

Open access · diamondAbstract read
In one paragraph

Article in Chemical science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
3.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 44 citations in OpenAlex.

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  18. Allostery in Protein Tyrosine Phosphatases is Enabled by Divergent Dynamics.Journal of chemical information and modeling · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 3 countries.

Ruidan ShenDepartment of Chemistry and Biochemistry, Utah State University Logan Utah 84322-0300 USA.
Rory M CreanScience for Life Laboratory, Department of Chemistry - BMC, Uppsala University, BMC Box 576 S-751 23 Uppsala Sweden.
Keith J OlsenDepartment of Chemistry and Biochemistry, Utah State University Logan Utah 84322-0300 USA.
Marina CorbellaScience for Life Laboratory, Department of Chemistry - BMC, Uppsala University, BMC Box 576 S-751 23 Uppsala Sweden.ORCID https://orcid.org/0000-0001-9209-868X
Ana R CalixtoScience for Life Laboratory, Department of Chemistry - BMC, Uppsala University, BMC Box 576 S-751 23 Uppsala Sweden.
Teisha RichanDepartment of Chemistry and Biochemistry, Utah State University Logan Utah 84322-0300 USA.
Tiago A S BrandãoDepartamento de Química, ICEX, Universidade Federal de Minas Gerais Belo Horizonte Minas Gerais 31270-901 Brazil.
Ryan D BerryDepartment of Chemistry and Biochemistry, Utah State University Logan Utah 84322-0300 USA.
Alex TolmanDepartment of Chemistry and Biochemistry, Utah State University Logan Utah 84322-0300 USA.
J Patrick LoriaDepartment of Chemistry, Yale University 225 Prospect Street New Haven CT 06520 USA.
Sean J JohnsonDepartment of Chemistry and Biochemistry, Utah State University Logan Utah 84322-0300 USA.ORCID https://orcid.org/0000-0001-7992-2494
Shina C L KamerlinScience for Life Laboratory, Department of Chemistry - BMC, Uppsala University, BMC Box 576 S-751 23 Uppsala Sweden.ORCID https://orcid.org/0000-0002-3190-1173
Alvan C HenggeDepartment of Chemistry and Biochemistry, Utah State University Logan Utah 84322-0300 USA.ORCID https://orcid.org/0000-0002-5696-2087
Utah State University · USUppsala University · SEUniversidade Federal de Minas Gerais · BRWhitney Museum of American Art · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
Mechanism of catalytic regulation and active site loop motions in related protein tyrosine phosphatasesR01GM112781 · NIGMS · YALE UNIVERSITY · PI LORIA, JOSEPH P · 2015 to 2024
$2.8M
NIGMS NIH HHS P41 GM103393NIGMS NIH HHS R01 GM112781
6 · The paper itself

Abstract

Protein tyrosine phosphatases (PTPs) possess a conserved mobile catalytic loop, the WPD-loop, which brings an aspartic acid into the active site where it acts as an acid/base catalyst. Prior experimental and computational studies, focused on the human enzyme PTP1B and the PTP from

Identifiers

PMID36507179
PMCPMC9682893
OpenAlexW4309066007

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.