Evidence map›Paper›PMID 36506031›Full record

ArticleFrontiers in cellular and infection microbiology2022

Metagenomic next-generation sequencing assists the diagnosis treatment of fungal osteoarticular infections.

Chaofan Zhang, Yunzhi Lin, Changyu Huang, Zida Huang, Xinyu Fang, Guochang Bai, Zeyu Zhang, Wenbo Li, Wenming Zhang

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 10 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Chaofan ZhangDepartment of Orthopaedic Surgery, The First Affiliated Hospital, Fujian Medical University, Fuzhou, China.
Yunzhi LinDepartment of Stomatology, The First Affiliated Hospital, Fujian Medical University, Fuzhou, China.
Changyu HuangDepartment of Orthopaedic Surgery, The First Affiliated Hospital, Fujian Medical University, Fuzhou, China.
Zida HuangDepartment of Orthopaedic Surgery, The First Affiliated Hospital, Fujian Medical University, Fuzhou, China.
Xinyu FangDepartment of Orthopaedic Surgery, The First Affiliated Hospital, Fujian Medical University, Fuzhou, China.
Guochang BaiDepartment of Orthopaedic Surgery, The First Affiliated Hospital, Fujian Medical University, Fuzhou, China.
Zeyu ZhangDepartment of Orthopaedic Surgery, The First Affiliated Hospital, Fujian Medical University, Fuzhou, China.
Wenbo LiDepartment of Orthopaedic Surgery, The First Affiliated Hospital, Fujian Medical University, Fuzhou, China.
Wenming ZhangDepartment of Orthopaedic Surgery, The First Affiliated Hospital, Fujian Medical University, Fuzhou, China.
Fujian Medical University · CNFirst Affiliated Hospital of Fujian Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Fungal osteoarticular infection (FOI) is not commonly seen in clinical practice but proposes a great challenge to orthopedic surgeons. In this study, we aimed to investigate the risk factors, the clinical features, and surgical outcomes of FOI in our institution. Specifically, we aimed to explore the role of metagenomic next-generation sequencing (mNGS) in the diagnosis and treatment of FOI. Methods: All the patients who were diagnosed and managed with FOI in our institution from January 2007 to December 2020 were retrospectively reviewed, including primary fungal implant-related infection, primary fungal osteomyelitis or arthritis, and fungal infections secondary to bacterial osteomyelitis or implant-related bacterial infections. The potential risk factors and the clinical and surgical features were analyzed. The pathogen data were compared between culture and the mNGS test. Results: A total of 25 patients were included, namely, 12 primary implant-related infections, 7 primary fungal osteomyelitis or arthritis, and 6 fungal infections secondary to bacterial osteomyelitis or implant-related bacterial infections. Most cases had undergone multiple surgeries or long-term antibiotic treatment. Diagnosis was mainly based on microbial culture and the mNGS test. Optimization of culture methods and the use of mNGS assisted the diagnosis. Specifically, mNGS was performed in 12 patients, 5 of whom were culture-negative. In the remaining seven cases, mNGS demonstrated the same results as culture. Management of FOI was complicated as most patients required multiple surgeries followed by long-term antifungal treatment. In selected cases, antifungal-impregnated cement spacer retention can be an optional choice. The overall success rate was 100% (25/25) for our cohort. Conclusion: We concluded that patients with comorbidities and a history of multiple surgeries or long-term antibiotics are under higher risk for FOI. Use of mNGS assists the diagnosis and treatment of FOI. Surgery combined with long-term antifungal treatment achieved satisfactory outcomes. In selected cases, antifungal-impregnated cement spacer retention can be an optional treatment choice.

Indexed as

ArthritisMycosesOsteomyelitisAnti-Bacterial AgentsAntifungal AgentsHumansMetagenomeMetagenomicsPostoperative ComplicationsRetrospective StudiesAnti-Bacterial AgentsAntifungal Agentsfungal osteoarticular infection (FOI)metagenomic next-generation sequencing (mNGS)osteomyelitisperiprosthetic joint infection (PJI)septic arthritis

Identifiers

PMID36506031
PMCPMC9726756
OpenAlexW4309698909

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.