Evidence map›Paper›PMID 36504162›Full record

ArticleThe EMBO journal2023

Structure of a bacterial ribonucleoprotein complex central to the control of cell envelope biogenesis.

Md Saiful Islam, Steven W Hardwick, Laura Quell, Svetlana Durica-Mitic, Dimitri Y Chirgadze, Boris Görke, Ben F Luisi

Abstract read
In one paragraph

Article in The EMBO journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Bacterial small regulatory RNAs.Nature reviews. Microbiology · 2026
    Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Md Saiful IslamDepartment of Biochemistry, University of Cambridge, Cambridge, UK.ORCID 0000-0001-9842-0676
Steven W HardwickDepartment of Biochemistry, University of Cambridge, Cambridge, UK.ORCID 0000-0001-9246-1864
Laura QuellDepartment of Microbiology, Immunobiology and Genetics, Max Perutz Labs, University of Vienna, Vienna Biocenter (VBC), Vienna, Austria.ORCID 0000-0002-5324-4020
Svetlana Durica-MiticDepartment of Microbiology, Immunobiology and Genetics, Max Perutz Labs, University of Vienna, Vienna Biocenter (VBC), Vienna, Austria.ORCID 0000-0003-2130-6116
Dimitri Y ChirgadzeDepartment of Biochemistry, University of Cambridge, Cambridge, UK.
Boris GörkeDepartment of Microbiology, Immunobiology and Genetics, Max Perutz Labs, University of Vienna, Vienna Biocenter (VBC), Vienna, Austria.ORCID 0000-0002-1682-5387
Ben F LuisiDepartment of Biochemistry, University of Cambridge, Cambridge, UK.ORCID 0000-0003-1144-9877

Funding

Austrian Science Fund FWF P 32410Wellcome Trust 200873/Z/16/Z
6 · The paper itself

Abstract

Biogenesis of the essential precursor of the bacterial cell envelope, glucosamine-6-phosphate (GlcN6P), is controlled by intricate post-transcriptional networks mediated by GlmZ, a small regulatory RNA (sRNA). GlmZ stimulates translation of the mRNA encoding GlcN6P synthtase in Escherichia coli, but when bound by RapZ protein, the sRNA becomes inactivated through cleavage by the endoribonuclease RNase E. Here, we report the cryoEM structure of the RapZ:GlmZ complex, revealing a complementary match of the RapZ tetrameric quaternary structure to structural repeats in the sRNA. The nucleic acid is contacted by RapZ mostly through a highly conserved domain that shares an evolutionary relationship with phosphofructokinase and suggests links between metabolism and riboregulation. We also present the structure of a precleavage intermediate formed between the binary RapZ:GlmZ complex and RNase E that reveals how GlmZ is presented and recognised by the enzyme. The structures provide a framework for understanding how other encounter complexes might guide recognition and action of endoribonucleases on target transcripts, and how structured substrates in polycistronic precursors may be recognised for processing by RNase E.

Indexed as

Escherichia coli ProteinsRNA, Small UntranslatedEndoribonucleasesEscherichia coliGene Expression Regulation, BacterialRibonucleoproteinsRNA, BacterialRNA-Binding ProteinsEndoribonucleasesEscherichia coli ProteinsRibonucleoproteinsRNA, BacterialRNA-Binding ProteinsRNA, Small UntranslatedYhbJ protein, E coliamino-sugar regulationPost-transcriptional controlRNA chaperoneRNA metabolismsmall regulatory RNA

Identifiers

PMID36504162
PMCPMC9841335

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.