Evidence map›Paper›PMID 36500683›Full record

ArticleMolecules (Basel, Switzerland)2022

An Accurate Approach for Computational pKa Determination of Phenolic Compounds.

Silvia Pezzola, Samuele Tarallo, Alessandro Iannini, Mariano Venanzi, Pierluca Galloni, Valeria Conte, Federica Sabuzi

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Article in Molecules (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Can Graph Neural Networks Understand Chemical Elements?Journal of chemical information and modeling · 2026
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  7. Predicting pRSC advances · 2025
    Article
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

7 authors.

Silvia PezzolaDepartment of Chemical Science and Technologies, University of Rome Tor Vergata, 00133 Rome, Italy.
Samuele TaralloDepartment of Chemical Science and Technologies, University of Rome Tor Vergata, 00133 Rome, Italy.
Alessandro IanniniDepartment of Chemical Science and Technologies, University of Rome Tor Vergata, 00133 Rome, Italy.
Mariano VenanziDepartment of Chemical Science and Technologies, University of Rome Tor Vergata, 00133 Rome, Italy.ORCID 0000-0001-9364-7441
Pierluca GalloniDepartment of Chemical Science and Technologies, University of Rome Tor Vergata, 00133 Rome, Italy.ORCID 0000-0002-0941-1354
Valeria ConteDepartment of Chemical Science and Technologies, University of Rome Tor Vergata, 00133 Rome, Italy.ORCID 0000-0001-5635-1086
Federica SabuziDepartment of Chemical Science and Technologies, University of Rome Tor Vergata, 00133 Rome, Italy.ORCID 0000-0002-3757-0598

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Computational chemistry is a valuable tool, as it allows for in silico prediction of key parameters of novel compounds, such as pKa. In the framework of computational pKa determination, the literature offers several approaches based on different level of theories, functionals and continuum solvation models. However, correction factors are often used to provide reliable models that adequately predict pKa. In this work, an accurate protocol based on a direct approach is proposed for computing phenols pKa. Importantly, this methodology does not require the use of correction factors or mathematical fitting, making it highly practical, easy to use and fast. Above all, DFT calculations performed in the presence two explicit water molecules using CAM-B3LYP functional with 6-311G+dp basis set and a solvation model based on density (SMD) led to accurate pKa values. In particular, calculations performed on a series of 13 differently substituted phenols provided reliable results, with a mean absolute error of 0.3. Furthermore, the model achieves accurate results with -CN and -NO

Indexed as

PhenolsWaterDensity Functional TheoryThermodynamicsPhenolsWaterCAM-B3LYPcomputational pKaDFTdirect approachphenolpKasolvation model based on density (SMD)thymol

Identifiers

PMID36500683
PMCPMC9736058

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.