Evidence map›Paper›PMID 36500483›Full record

ArticleMolecules (Basel, Switzerland)2022

Exploratory Metabolomics Underscores the Folate Enzyme ALDH1L1 as a Regulator of Glycine and Methylation Reactions.

Blake R Rushing, Halle M Fogle, Jaspreet Sharma, Mikyoung You, Jonathan P McCormac, Sabrina Molina, Susan Sumner, Natalia I Krupenko, Sergey A Krupenko

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Blake R RushingNutrition Research Institute, UNC Chapel Hill, Kannapolis, NC 28081, USA.ORCID 0000-0002-8662-3270
Halle M FogleNutrition Research Institute, UNC Chapel Hill, Kannapolis, NC 28081, USA.ORCID 0000-0001-6334-4407
Jaspreet SharmaNutrition Research Institute, UNC Chapel Hill, Kannapolis, NC 28081, USA.ORCID 0000-0003-4777-7805
Mikyoung YouNutrition Research Institute, UNC Chapel Hill, Kannapolis, NC 28081, USA.
Jonathan P McCormacNutrition Research Institute, UNC Chapel Hill, Kannapolis, NC 28081, USA.ORCID 0000-0002-0292-5774
Sabrina MolinaNutrition Research Institute, UNC Chapel Hill, Kannapolis, NC 28081, USA.
Susan SumnerNutrition Research Institute, UNC Chapel Hill, Kannapolis, NC 28081, USA.
Natalia I KrupenkoNutrition Research Institute, UNC Chapel Hill, Kannapolis, NC 28081, USA.ORCID 0000-0003-2977-1557
Sergey A KrupenkoNutrition Research Institute, UNC Chapel Hill, Kannapolis, NC 28081, USA.ORCID 0000-0002-6926-2776
University of North Carolina at Chapel Hill · US

Funding

UNIV OF NORTH CAROLINA CLINICAL NUTRITION RESEARCH UNITP30DK056350 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Venkata Saroja Voruganti · 1999 to 2026
$31.6M
Mechanistic and metabolomic underpinnings of ALDH1L1 polymorphisms in the regulation of glycine metabolismR01DK126666 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KRUPENKO, SERGEY A, SUMNER, SUSAN J · 2021 to 2025
$3.4M
NIDDK NIH HHS P30 DK056350NIDDK NIH HHS R01 DK126666NIH HHS R01 DK126666
6 · The paper itself

Abstract

Folate (vitamin B9) is involved in one-carbon transfer reactions and plays a significant role in nucleic acid synthesis and control of cellular proliferation, among other key cellular processes. It is now recognized that the role of folates in different stages of carcinogenesis is complex, and more research is needed to understand how folate reactions become dysregulated in cancers and the metabolic consequences that occur as a result. ALDH1L1 (cytosolic 10-formyltetrahydrofolate dehydrogenase), an enzyme of folate metabolism expressed in many tissues, is ubiquitously downregulated in cancers and is not expressed in cancer cell lines. The RT4 cell line (derived from papillary bladder cancer) which expresses high levels of ALDH1L1 represents an exception, providing an opportunity to explore the metabolic consequences of the loss of this enzyme. We have downregulated this protein in RT4 cells (shRNA driven knockdown or CRISPR driven knockout) and compared metabolomes of ALDH1L1-expressing and -deficient cells to determine if metabolic changes linked to the loss of this enzyme might provide proliferative and/or survival advantages for cancer cells. In this study, cell extracts were analyzed using Ultra High Performance Liquid Chromatography High Resolution Mass Spectrometry (UHPLC-HR-MS). A total of 13,339 signals were identified or annotated using an in-house library and public databases. Supervised and unsupervised multivariate analysis revealed metabolic differences between RT4 cells and ALDH1L1-deficient clones. Glycine (8-fold decrease) and metabolites derived from S-adenosylmethionine utilizing pathways were significantly decreased in the ALDH1L1-deficient clones, compared with RT4 cells. Other changes linked to ALDH1L1 downregulation include decreased levels of amino acids, Krebs cycle intermediates, and ribose-5-phosphate, and increased nicotinic acid. While the ALDH1L1-catalyzed reaction is directly linked to glycine biosynthesis and methyl group flux, its overall effect on cellular metabolism extends beyond immediate metabolic pathways controlled by this enzyme.

Indexed as

Folic AcidNeoplasmsAldehyde Dehydrogenase 1 FamilyGlycineHumansMetabolomicsMethylationRetinal DehydrogenaseS-AdenosylmethionineAldehyde Dehydrogenase 1 FamilyFolic AcidGlycineRetinal DehydrogenaseS-AdenosylmethionineALDH1L1cancerfolatemetabolomics

Identifiers

PMID36500483
PMCPMC9740053
OpenAlexW4311051937

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.