Evidence map›Paper›PMID 36499258›Full record

ArticleInternational journal of molecular sciences2022

The Transcriptome and Proteome Networks of Malignant Tumours Reveal Atavistic Attractors of Polyploidy-Related Asexual Reproduction.

Ninel M Vainshelbaum, Alessandro Giuliani, Kristine Salmina, Dace Pjanova, Jekaterina Erenpreisa

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 2 pooled it
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 2 syntheses or guidelines pooled it, 14 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Frontiers in cell and developmental biology · 2024
    Review
  6. Special Issue "Advances in Genome Regulation in Cancer".International journal of molecular sciences · 2023
    Article
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Ninel M VainshelbaumCancer Research Division, Latvian Biomedicine Research and Study Centre, LV-1067 Riga, Latvia.
Alessandro GiulianiEnvironmen and Health Department, Istituto Superiore di Sanità, 00161 Rome, Italy.ORCID 0000-0002-4640-804X
Kristine SalminaCancer Research Division, Latvian Biomedicine Research and Study Centre, LV-1067 Riga, Latvia.
Dace PjanovaCancer Research Division, Latvian Biomedicine Research and Study Centre, LV-1067 Riga, Latvia.ORCID 0000-0002-3993-7939
Jekaterina ErenpreisaCancer Research Division, Latvian Biomedicine Research and Study Centre, LV-1067 Riga, Latvia.ORCID 0000-0002-2870-7775
Latvian Biomedical Research and Study Centre · LVIstituto Superiore di Sanità · IT

Funding

European Regional Development Fund 1.1.1.2/VIAA/3/19/463European Social Fund 8.2.2.0/20/I/006
6 · The paper itself

Abstract

The expression of gametogenesis-related (GG) genes and proteins, as well as whole genome duplications (WGD), are the hallmarks of cancer related to poor prognosis. Currently, it is not clear if these hallmarks are random processes associated only with genome instability or are programmatically linked. Our goal was to elucidate this via a thorough bioinformatics analysis of 1474 GG genes in the context of WGD. We examined their association in protein-protein interaction and coexpression networks, and their phylostratigraphic profiles from publicly available patient tumour data. The results show that GG genes are upregulated in most WGD-enriched somatic cancers at the transcriptome level and reveal robust GG gene expression at the protein level, as well as the ability to associate into correlation networks and enrich the reproductive modules. GG gene phylostratigraphy displayed in WGD+ cancers an attractor of early eukaryotic origin for DNA recombination and meiosis, and one relative to oocyte maturation and embryogenesis from early multicellular organisms. The upregulation of cancer-testis genes emerging with mammalian placentation was also associated with WGD. In general, the results suggest the role of polyploidy for soma-germ transition accessing latent cancer attractors in the human genome network, which appear as pre-formed along the whole Evolution of Life.

Indexed as

Gene DuplicationNeoplasmsAnimalsEvolution, MolecularGenome, PlantHumansMammalsPolyploidyProteomeTranscriptomeProteomeatavismbasic meiosis attractorbiological interaction networkscancerearly embryofemale meiosisgene phylostratigraphypseudo-placentationsoma–germ transitionwhole genome duplications

Identifiers

PMID36499258
PMCPMC9736112
OpenAlexW4310995148

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.