Evidence map›Paper›PMID 36499217›Full record

ArticleInternational journal of molecular sciences2022

ONT-Based Alternative Assemblies Impact on the Annotations of Unique versus Repetitive Features in the Genome of a Romanian Strain of

Alexandru Marian Bologa, Ileana Stoica, Attila Cristian Ratiu, Nicoleta Denisa Constantin, Alexandru Al Ecovoiu

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Alexandru Marian BologaDepartment of Genetics, Faculty of Biology, University of Bucharest, 060101 Bucharest, Romania.
Ileana StoicaDepartment of Genetics, Faculty of Biology, University of Bucharest, 060101 Bucharest, Romania.
Attila Cristian RatiuDepartment of Genetics, Faculty of Biology, University of Bucharest, 060101 Bucharest, Romania.
Nicoleta Denisa ConstantinDepartment of Genetics, Faculty of Biology, University of Bucharest, 060101 Bucharest, Romania.
Alexandru Al EcovoiuDepartment of Genetics, Faculty of Biology, University of Bucharest, 060101 Bucharest, Romania.
University of Bucharest · RO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To date, different strategies of whole-genome sequencing (WGS) have been developed in order to understand the genome structure and functions. However, the analysis of genomic sequences obtained from natural populations is challenging and the biological interpretation of sequencing data remains the main issue. The MinION device developed by Oxford Nanopore Technologies (ONT) is able to generate long reads with minimal costs and time requirements. These valuable assets qualify it as a suitable method for performing WGS, especially in small laboratories. The long reads resulted using this sequencing approach can cover large structural variants and repetitive sequences commonly present in the genomes of eukaryotes. Using MinION, we performed two WGS assessments of a Romanian local strain of

Indexed as

Drosophila melanogasterNanoporesAnimalsGenomicsHigh-Throughput Nucleotide SequencingSequence Analysis, DNAWhole Genome Sequencingde novo genome assemblyDrosophila melanogasterMinIONnanopore sequencingnatural transposonsONT

Identifiers

PMID36499217
PMCPMC9741293
OpenAlexW4310171560

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.