Evidence map›Paper›PMID 36497195›Full record

ArticleCells2022

Caveolin-1 rs1997623 Single Nucleotide Polymorphism Creates a New Binding Site for the Early B-Cell Factor 1 That Instigates Adipose Tissue CAV1 Protein Overexpression.

Ashraf Al Madhoun, Dania Haddad, Rasheeba Nizam, Lavina Miranda, Shihab Kochumon, Reeby Thomas, Thangavel Alphonse Thanaraj, Rasheed Ahmad, Milad S Bitar, Fahd Al-Mulla

Open access · goldAbstract read
In one paragraph

Article in Cells, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Ashraf Al MadhounGenetics and Bioinformatics, Dasman Diabetes Institute, Dasman 15462, Kuwait.ORCID 0000-0001-8593-3878
Dania HaddadGenetics and Bioinformatics, Dasman Diabetes Institute, Dasman 15462, Kuwait.ORCID 0000-0001-6687-6361
Rasheeba NizamGenetics and Bioinformatics, Dasman Diabetes Institute, Dasman 15462, Kuwait.ORCID 0000-0002-4762-9469
Lavina MirandaAnimal and Imaging Core Facilities, Dasman Diabetes Institute, Dasman 15462, Kuwait.
Shihab KochumonImmunology & Microbiology Department, Dasman Diabetes Institute, Dasman 15462, Kuwait.
Reeby ThomasImmunology & Microbiology Department, Dasman Diabetes Institute, Dasman 15462, Kuwait.ORCID 0000-0001-9933-0285
Thangavel Alphonse ThanarajGenetics and Bioinformatics, Dasman Diabetes Institute, Dasman 15462, Kuwait.ORCID 0000-0002-4574-5343
Rasheed AhmadImmunology & Microbiology Department, Dasman Diabetes Institute, Dasman 15462, Kuwait.ORCID 0000-0001-5746-0743
Milad S BitarGenetics and Bioinformatics, Dasman Diabetes Institute, Dasman 15462, Kuwait.
Fahd Al-MullaGenetics and Bioinformatics, Dasman Diabetes Institute, Dasman 15462, Kuwait.ORCID 0000-0001-5409-3829
Dasman Diabetes Institute · KWKuwait University · KW

Funding

Kuwait Foundation for the Advancement of Sciences RA CB-2021-007
6 · The paper itself

Abstract

Caveolin-1 (CAV1) is implicated in the pathophysiology of diabetes and obesity. Previously, we demonstrated an association between the CAV1 rs1997623 C > A variant and metabolic syndrome (MetS). Here, we decipher the functional role of rs1997623 in CAV1 gene regulation. A cohort of 38 patients participated in this study. The quantitative MetS scores (siMS) of the participants were computed. CAV1 transcript and protein expression were tested in subcutaneous adipose tissue using RT-PCR and immunohistochemistry. Chromatin immunoprecipitation assays were performed using primary preadipocytes isolated from individuals with different CAV1 rs1997623 genotypes (AA, AC, and CC). The regulatory region flanking the variant was cloned into a luciferase reporter plasmid and expressed in human preadipocytes. Additional knockdown and overexpression assays were carried out. We show a significant correlation between siMS and CAV1 transcript levels and protein levels in human adipose tissue collected from an Arab cohort. We found that the CAV1 rs1997623 A allele generates a transcriptionally active locus and a new transcription factor binding site for early B-cell factor 1 (EBF1), which enhanced CAV1 expression. Our in vivo and in vitro combined study implicates, for the first time, EBF1 in regulating CAV1 expression in individuals harboring the rs1997623 C > A variant.

Indexed as

Caveolin 1Metabolic SyndromePolymorphism, Single NucleotideTrans-ActivatorsAdipose TissueAllelesBinding SitesGenotypeHumansCAV1 protein, humanCaveolin 1EBF1 protein, humanTrans-ActivatorsAP-2αcaveolin-1EBF1metabolic syndromers1997623

Identifiers

PMID36497195
PMCPMC9738758
OpenAlexW4311667762

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.