Evidence map›Paper›PMID 36490315›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

The BRCA1 BRCT promotes antisense RNA production and double-stranded RNA formation to suppress ribosomal R-loops.

Chou-Wei Chang, Anup Kumar Singh, Min Li, Li Guan, Nhung Le, Kenneth Omabe, Feng Liang, Yilun Liu

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. DDX41: exploring the roles of a versatile helicase.Biochemical Society transactions · 2024
    Review
  6. Article
  7. Targeting theFrontiers in cell and developmental biology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Chou-Wei ChangVesign Therapeutics, Cambridge, MA 02139.
Anup Kumar SinghDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute of City of Hope, Duarte, CA 91010-3000.
Min LiDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute of City of Hope, Duarte, CA 91010-3000.
Li GuanDepartment of Radiation Oncology, Stanford University, Stanford, CA 94305.
Nhung LeDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute of City of Hope, Duarte, CA 91010-3000.
Kenneth OmabeDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute of City of Hope, Duarte, CA 91010-3000.
Feng LiangNeuroscience Graduate Program, University of Southern California, Los Angeles, CA 90089.
Yilun LiuDepartment of Cancer Genetics and Epigenetics, Beckman Research Institute of City of Hope, Duarte, CA 91010-3000.ORCID 0000-0001-6884-8487
City of Hope · USStanford University · USUniversity of Southern California · US

Funding

Transgenic Mouse FacilityP30CA033572 · NCI · CITY OF HOPE/BECKMAN RESEARCH INSTITUTE · PI STANLEY R. HAMILTON · 1985 to 2026
$86.3M
Regulation of Ionizing Radiation-Induced DNA Damage ResponseR01CA130899 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LIU, YILUN · 2009 to 2023
$5.5M
DNA Damage Response and Oncogenic SignalingT32CA186895 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI BINGHUI SHEN, Jeremy Michael Stark · 2016 to 2026
$2.1M
RECQ5-dependent SUMO2 conjugation of PCNA in the resolution of transcription-replication conflictsR01CA225843 · NCI · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI LIU, YILUN · 2019 to 2023
$2.0M
The function of Topoisomerase I SUMOylation in transcription and chemoresistanceR01GM127602 · NIGMS · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI LIU, YILUN · 2018 to 2021
$1.4M
Radiosensitization via Targeting Cell DeathR01CA125842 · NCI · VANDERBILT UNIVERSITY · PI LU, BO · 2007 to 2010
$935k
NCI NIH HHS P30 CA033572NCI NIH HHS R01 CA125842NCI NIH HHS R01 CA130899NCI NIH HHS R01 CA225843NCI NIH HHS T32 CA186895NIGMS NIH HHS R01 GM127602
6 · The paper itself

Abstract

R-loops, or RNA:DNA hybrids, can induce DNA damage, which requires DNA repair factors including breast cancer type 1 susceptibility protein (BRCA1) to restore genomic integrity. To date, several pathogenic mutations have been found within the tandem BRCA1 carboxyl-terminal (BRCT) domains that mediate BRCA1 interactions with proteins and DNA in response to DNA damage. Here, we describe a nonrepair role of BRCA1 BRCT in suppressing ribosomal R-loops via two mechanisms. Through its RNA binding and annealing activities, BRCA1 BRCT facilitates the formation of double-stranded RNA between ribosomal RNA (rRNA) and antisense-rRNA (as-rRNA), hereby minimizing rRNA hybridization to ribosomal DNA to form R-loops. BRCA1 BRCT also promotes RNA polymerase I-dependent transcription of as-rRNA to enhance double-stranded rRNA (ds-rRNA) formation. In addition, BRCA1 BRCT-mediated as-rRNA production restricts rRNA maturation in unperturbed cells. Hence, impairing as-rRNA transcription and ds-rRNA formation due to BRCA1 BRCT deficiency deregulates rRNA processing and increases ribosomal R-loops and DNA breaks. Our results link ribosomal biogenesis dysfunction to BRCA1-associated genomic instability.

Indexed as

BRCA1 ProteinRNA, Double-StrandedDNADNA DamageDNA RepairRNA, AntisenseBRCA1 ProteinDNARNA, AntisenseRNA, Double-Strandedantisense RNABRCA1ribosomal RNAR-loops

Identifiers

PMID36490315
PMCPMC9897471
OpenAlexW4310969352

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.