Evidence map›Paper›PMID 36482787›Full record

ArticleProtein science : a publication of the Protein Society2023

Selective incorporation of 5-hydroxytryptophan blocks long range electron transfer in oxalate decarboxylase.

Anthony John Pastore, Alvaro Montoya, Manasi Kamat, Kari B Basso, James S Italia, Abhishek Chatterjee, Maria Drosou, Dimitrios A Pantazis, Alexander Angerhofer

Open access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Anthony John PastoreDepartment of Chemistry, University of Florida, Gainesville, Florida, USA.ORCID 0000-0002-7526-8293
Alvaro MontoyaDepartment of Chemistry, University of Florida, Gainesville, Florida, USA.ORCID 0000-0003-4985-7323
Manasi KamatDepartment of Chemistry, University of Florida, Gainesville, Florida, USA.ORCID 0000-0002-6031-0794
Kari B BassoDepartment of Chemistry, University of Florida, Gainesville, Florida, USA.ORCID 0000-0003-1268-6655
James S ItaliaDepartment of Chemistry, Boston College, Chestnut Hill, Massachusetts, USA.ORCID 0000-0003-2653-5516
Abhishek ChatterjeeDepartment of Chemistry, Boston College, Chestnut Hill, Massachusetts, USA.ORCID 0000-0002-6231-5302
Maria DrosouMax-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany.ORCID 0000-0002-4550-710X
Dimitrios A PantazisMax-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany.ORCID 0000-0002-2146-9065
Alexander AngerhoferDepartment of Chemistry, University of Florida, Gainesville, Florida, USA.ORCID 0000-0002-8580-6024
University of Florida · USBoston College · USMax-Planck-Institut für Kohlenforschung · DE

Funding

A genetically encoded toolset to decipher the biology of post-translational modifications in the mammalian proteomeR35GM136437 · NIGMS · BOSTON COLLEGE · PI Abhishek Chatterjee · 2020 to 2026
$4.0M
Acquisition of a Q Exactive HF Hybrid Quadrupole-OrbitrapS10OD021758 · OD · UNIVERSITY OF FLORIDA · PI BASSO, KARI B · 2017 to 2017
$600k
NIGMS NIH HHS R35 GM136437NIH HHS S10 OD021758
6 · The paper itself

Abstract

Oxalate decarboxylase from Bacillus subtilis is a binuclear Mn-dependent acid stress response enzyme that converts the mono-anion of oxalic acid into formate and carbon dioxide in a redox neutral unimolecular disproportionation reaction. A π-stacked tryptophan dimer, W96 and W274, at the interface between two monomer subunits facilitates long-range electron transfer between the two Mn ions and plays an important role in the catalytic mechanism. Substitution of W96 with the unnatural amino acid 5-hydroxytryptophan leads to a persistent EPR signal which can be traced back to the neutral radical of 5-hydroxytryptophan with its hydroxyl proton removed. 5-Hydroxytryptophan acts as a hole sink preventing the formation of Mn(III) at the N-terminal active site and strongly suppresses enzymatic activity. The lower boundary of the standard reduction potential for the active site Mn(II)/Mn(III) couple can therefore be estimated as 740 mV against the normal hydrogen electrode at pH 4, the pH of maximum catalytic efficiency. Our results support the catalytic importance of long-range electron transfer in oxalate decarboxylase while at the same time highlighting the utility of unnatural amino acid incorporation and specifically the use of 5-hydroxytryptophan as an energetic sink for hole hopping to probe electron transfer in redox proteins.

Indexed as

5-HydroxytryptophanElectronsCarboxy-LyasesElectron Spin Resonance SpectroscopyManganeseOxalic AcidOxidation-Reduction5-HydroxytryptophanCarboxy-LyasesManganeseoxalate decarboxylaseOxalic Acid5-hydroxytryptophandensity functional theoryelectron paramagnetic resonancegenetic code expansionlong range electron transferoxalate decarboxylase

Identifiers

PMID36482787
PMCPMC9801070
OpenAlexW4310957608

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.