Evidence map›Paper›PMID 36482464›Full record

ArticleBMC medicine2022

Identifying novel proteins underlying schizophrenia via integrating pQTLs of the plasma, CSF, and brain with GWAS summary data.

Xiaojing Gu, Meng Dou, Weiming Su, Zheng Jiang, Qingqing Duan, Bei Cao, Yongping Chen

Open access · goldAbstract read
In one paragraph

Article in BMC medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Xiaojing GuMental Health Center, West China Hospital, Sichuan University, Chengdu, 610041, Sichuan, China.
Meng DouChengdu Institute of Computer Application, Chinese Academy of Sciences, Chengdu, 610041, Sichuan, China.
Weiming SuDepartment of Neurology, West China Hospital, Sichuan University, Chengdu, 610041, Sichuan, China.
Zheng JiangDepartment of Neurology, West China Hospital, Sichuan University, Chengdu, 610041, Sichuan, China.
Qingqing DuanDepartment of Neurology, West China Hospital, Sichuan University, Chengdu, 610041, Sichuan, China.
Bei CaoDepartment of Neurology, West China Hospital, Sichuan University, Chengdu, 610041, Sichuan, China.
Yongping ChenDepartment of Neurology, West China Hospital, Sichuan University, Chengdu, 610041, Sichuan, China. yongping.chen@wchscu.cn.
Sichuan University · CNWest China Hospital of Sichuan University · CNChinese Academy of Sciences · CN

Funding

Key Research and Development Program of Sichuan Province 2022NSFSC0749the National Key Research and Development Program of China 2022YFC2703101the National Natural Science Foundation of China 81971188
6 · The paper itself

Abstract

backgroundSchizophrenia (SCZ) is a chronic and severe mental illness with no cure so far. Mendelian randomization (MR) is a genetic method widely used to explore etiologies of complex traits. In the current study, we aimed to identify novel proteins underlying SCZ with a systematic analytical approach.

methodsWe integrated protein quantitative trait loci (pQTLs) of the brain, cerebrospinal fluid (CSF), and plasma with the latest and largest SCZ genome-wide association study (GWAS) via a systematic analytical framework, including two-sample MR analysis, Steiger filtering analysis, and Bayesian colocalization analysis.

resultsThe genetically determined protein level of C4A/C4B (OR = 0.70, p = 1.66E-07) in the brain and ACP5 (OR = 0.42, p = 3.73E-05), CNTN2 (OR = 0.62, p = 2.57E-04), and PLA2G7 (OR = 0.71, p = 1.48E-04) in the CSF was associated with a lower risk of SCZ, while the genetically determined protein level of TIE1 (OR = 3.46, p = 4.76E-05), BCL6 (OR = 3.63, p = 1.59E-07), and MICB (OR = 4.49, p = 2.31E-11) in the CSF were associated with an increased risk for SCZ. Pathway enrichment analysis indicated that genetically determined proteins suggestively associated with SCZ were enriched in the biological process of the immune response.

conclusionIn conclusion, we identified one protein in the brain and six proteins in the CSF that showed supporting evidence of being potentially associated with SCZ, which could provide insights into future mechanistic studies to find new treatments for the disease. Our results also supported the important role of neuroinflammation in the pathogenesis of SCZ.

Indexed as

Genome-Wide Association StudySchizophreniaBayes TheoremBrainHumansComplement 4Mendelian randomizationNeuroinflammationProtein quantitative trait lociSchizophrenia

Identifiers

PMID36482464
PMCPMC9730613
OpenAlexW4311579371

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.