Evidence map›Paper›PMID 36482290›Full record

ArticleBMC genomics2022

A comparative transcriptomic analysis reveals a coordinated mechanism activated in response to cold acclimation in common vetch (Vicia sativa L.).

Rui Dong, Ben Luo, Li Tang, Qiu-Xia Wang, Zhong-Jie Lu, Chao Chen, Feng Yang, Song Wang, Jin He

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Cold stress adaptation inFrontiers in plant science · 2025
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Rui DongDepartment of Grassland Science, College of Animal Science, Guizhou University, Guiyang, China.
Ben LuoDepartment of Grassland Science, College of Animal Science, Guizhou University, Guiyang, China.
Li TangSchool of Tropical Crops, Hainan University, Haikou, China.
Qiu-Xia WangState Key Laboratory of Grassland Agro-ecosystems, China, College of Pastoral Agriculture Science and Technology, Lanzhou University, Lanzhou, China.
Zhong-Jie LuDepartment of Grassland Science, College of Animal Science, Guizhou University, Guiyang, China.
Chao ChenDepartment of Grassland Science, College of Animal Science, Guizhou University, Guiyang, China.
Feng YangGrassland Technology Experiment and Extension Station, Guiyang, China.
Song WangGrassland Technology Experiment and Extension Station, Guiyang, China.
Jin HeCollege of Agriculture, Guizhou University, Guiyang, China. hejin0811@163.com.
Guizhou University · CNInstitute of Grassland Research · CNHainan University · CNLanzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDue to its strong abiotic stress tolerance, common vetch is widely cultivated as a green manure and forage crop in grass and crop rotation systems. The comprehensive molecular mechanisms activated in common vetch during cold adaptation remain unknown.

resultsWe investigated physiological responses and transcriptome profiles of cold-sensitive (Lanjian No. 1) and cold-tolerant (Lanjian No. 3) cultivars during cold acclimation to explore the molecular mechanisms of cold acclimation. In total, 2681 and 2352 differentially expressed genes (DEGs) were identified in Lanjian No. 1 and Lanjian No. 3, respectively; 7532 DEGs were identified in both lines. DEGs involved in "plant hormone signal transduction" were significantly enriched during cold treatment, and 115 DEGs involved in cold-processed hormone signal transduction were identified. Common vetch increased the level of indoleacetic acid (IAA) by upregulating the transcriptional regulator Aux/IAA and downregulating GH3, endowing it with stronger cold tolerance. An auxin-related DEG was overexpressed in yeast and shown to possess a biological function conferring cold tolerance.

conclusionThis study identifies specific genes involved in Ca

Indexed as

Vicia sativaGenomicsCold acclimationCold responseOmmon vetchTranscriptome analysisWeighted correlation network analysis (WGCNA)

Identifiers

PMID36482290
PMCPMC9733113
OpenAlexW4311588024

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.