Evidence map›Paper›PMID 36480497›Full record

ArticlePloS one2022

Targeted deep sequencing analyses of long QT syndrome in a Japanese population.

Yuki Nagata, Ryo Watanabe, Christian Eichhorn, Seiko Ohno, Takeshi Aiba, Taisuke Ishikawa, Yukiko Nakano, Yoshiyasu Aizawa, Kenshi Hayashi, Nobuyuki Murakoshi and 22 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Calcium release channel deficiency syndrome in patients diagnosed with idiopathic ventricular fibrillation and decedents classified as sudden unexplained death in the young.Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology · 2026
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

32 authors at 19 institutions in 3 countries.

Yuki NagataBioresourse Research Center, Tokyo Medical and Dental University (TMDU), Tokyo, Japan.ORCID 0000-0002-7859-9661
Ryo WatanabeDepartment of Human Genetics and Disease Diversity, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University (TMDU), Tokyo, Japan.
Christian EichhornDepartment of Human Genetics and Disease Diversity, Graduate School of Medical and Dental Sciences, Tokyo Medical and Dental University (TMDU), Tokyo, Japan.
Seiko OhnoDepartment of Bioscience and Genetics, National Cerebral and Cardiovascular Center, Suita, Japan.
Takeshi AibaDevision of Arrhythmia, National Cerebral and Cardiovascular Center, Suita, Japan.
Taisuke IshikawaOmics Research Center, National Cerebral and Cardiovascular Center, Suita, Japan.
Yukiko NakanoDepartment of Cardiovascular Medicine, Hiroshima University, Hiroshima, Japan.
Yoshiyasu AizawaDepartment of Cardiology, International University of Health and Welfare Narita Hospital, Narita, Japan.
Kenshi HayashiDepartment of Cardiovascular Medicine, Kanazawa University Graduate School of Medical Sciences, Kanazawa, Japan.
Nobuyuki MurakoshiDepartment of Cardiology, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Tadashi NakajimaDepartment of Cardiovascular Medicine, Gunma University Graduate School of Medicine, Maebashi, Japan.
Nobue YagiharaDepartment of Cardiovascular Medicine, Niigata University Graduate School of Medical and Dental Sciences, Niigata, Japan.ORCID 0000-0003-2298-6053
Hiroyuki MishimaDepartment of Human Genetics, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan.
Takeaki SudoInstitute of Education, Tokyo Medical and Dental University (TMDU), Tokyo, Japan.
Chihiro HiguchiArtificial Intelligence Center for Health and Biomedical Research, National Institutes of Biomedical Innovation, Health and Nutrition, Ibaraki, Japan.
Atsushi TakahashiDepartment of Genomic Medicine, National Cerebral and Cardiovascular Center, Suita, Japan.
Akihiro SekineDepartment of Infection and Host Defense, Graduate School of Medicine, Chiba University, Chiba, Japan.
Takeru MakiyamaDepartment of Cardiovascular Medicine, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
Yoshihiro TanakaCenter for Arrhythmia Research, Northwestern University Feinberg School of Medicine, Chicago, Illinois, United States of America.
Atsuyuki WatanabeDepartment of Cardiology, National Hospital Organization Okayama Medical Center, Okayama, Japan.
Motomi TachibanaDepartment of Cardiology, Sakakibara heart institute of Okayama, Okayama, Japan.
Hiroshi MoritaDepartment of Cardiovascular Therapeutics, Okayama University Graduate School of Medicine, Dentistry and Pharmaceutical Sciences, Okayama, Japan.
Koh-Ichiro YoshiuraDepartment of Human Genetics, Atomic Bomb Disease Institute, Nagasaki University, Nagasaki, Japan.
Tatsuhiko TsunodaLaboratory for Medical Science Mathematics, Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
Hiroshi WatanabeDepartment of Cardiovascular Medicine, Niigata University Graduate School of Medical and Dental Sciences, Niigata, Japan.
Masahiko KurabayashiDepartment of Cardiovascular Medicine, Gunma University Graduate School of Medicine, Maebashi, Japan.
Akihiko NogamiDepartment of Cardiology, Faculty of Medicine, University of Tsukuba, Tsukuba, Japan.
Yasuki KiharaDepartment of Cardiovascular Medicine, Hiroshima University, Hiroshima, Japan.
Minoru HorieDepartment of Cardiovascular Medicine, Shiga University of Medical Science, Otsu, Japan.
Wataru ShimizuDepartment of Cardiovascular Medicine, Nippon Medical School, Tokyo, Japan.
Naomasa MakitaOmics Research Center, National Cerebral and Cardiovascular Center, Suita, Japan.
Toshihiro TanakaBioresourse Research Center, Tokyo Medical and Dental University (TMDU), Tokyo, Japan.ORCID 0000-0001-6201-9784
National Cerebral and Cardiovascular Center · JPTokyo Medical and Dental University · JPGunma University · JPHiroshima University · JPNagasaki University · JPNiigata University · JPUniversity of Tsukuba · JPChiba University · JPInternational University of Health and Welfare · JPKanazawa University · JPKyoto University · JPNational Hospital Organization · JPNational Institute of Biomedical Innovation, Health and Nutrition · JPNippon Medical School · JPNorthwestern University · USOkayama University · JPRIKEN Center for Integrative Medical Sciences · JPSakakibara Hospital · JPShiga University of Medical Science · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Long QT syndrome (LQTS) is one of the most common inherited arrhythmias and multiple genes have been reported as causative. Presently, genetic diagnosis for LQTS patients is becoming widespread and contributing to implementation of therapies. However, causative genetic mutations cannot be detected in about 20% of patients. To elucidate additional genetic mutations in LQTS, we performed deep-sequencing of previously reported 15 causative and 85 candidate genes for this disorder in 556 Japanese LQTS patients. We performed in-silico filtering of the sequencing data and found 48 novel variants in 33 genes of 53 cases. These variants were predicted to be damaging to coding proteins or to alter the binding affinity of several transcription factors. Notably, we found that most of the LQTS-related variants in the RYR2 gene were in the large cytoplasmic domain of the N-terminus side. They might be useful for screening of LQTS patients who had no known genetic factors. In addition, when the mechanisms of these variants in the development of LQTS are revealed, it will be useful for early diagnosis, risk stratification, and selection of treatment.

Indexed as

East Asian PeopleLong QT SyndromeHigh-Throughput Nucleotide SequencingHumans

Identifiers

PMID36480497
PMCPMC9731492
OpenAlexW4311583280

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.