ArticleHorticulture research2022
The banana genome hub: a community database for genomics in the Musaceae.
Article in Horticulture research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed.
- Recurrent evolution of cryptic triploids in cultivated enset increases yield.PLoS genetics · 2026Article
- Going wild in banana breeding enables Fusarium-resistant hybrids with improved fruit quality.Nature communications · 2026Article
- Genome-wide identification of the SBP-box gene family in banana and functional characterization of MaSBP17 as a negative regulator of fruit ripening.Frontiers in plant science · 2026Article
- Article
- Chromosomal deletions in banana somaclonal variants reveal negative regulators of immunity underlyingProceedings of the National Academy of Sciences of the United States of America · 2025Article
- Genomic resources and genetic improvement of vital tropical and subtropical fruit crops: current status and prospects.AoB PLANTS · 2025Review
- Genome-Wide Identification of Cytokinin Response Factors (CRFs) Involved in Stress Responses in Banana (International journal of molecular sciences · 2025Article
- Banana breeding by genome design.Journal of integrative plant biology · 2025Review
- Ginger genome reveals the SMPED1 gene causing sex-phase synchrony and outcrossing in a flowering plant.Nature plants · 2025Article
- Shaping the future of bananas: advancing genetic trait regulation and breeding in the postgenomics era.Horticulture research · 2025Article
- Genome-Wide Identification and Expression Analysis Unveil the Involvement of the Succinic Semialdehyde Dehydrogenase (International journal of molecular sciences · 2025Article
- Unravelling genomic drivers of speciation in Musa through genome assemblies of wild banana ancestors.Nature communications · 2025Article
- Novel Targets for Fruit Conservation Strategies Revealed by Omics Studies: A Systematic Review and Meta-Analysis.International journal of food science · 2025Review
- Genome-wide analysis of flavonoid biosynthetic genes in Musaceae (AoB PLANTS · 2024Article
- PPGV: a comprehensive database of peach population genome variation.BMC plant biology · 2024Article
- Targeted knockout of early nodulin-like 3 (MusaENODL3) gene in banana reveals its function in resistance to Xanthomonas wilt disease.Plant biotechnology journal · 2024Article
- Chromosome-level genome assemblies ofHorticulture research · 2024Article
- Dataset from transcriptome profiling ofData in brief · 2024Article
- High-quality genome assemblies for two Australimusa bananas (Musa spp.) and insights into regulatory mechanisms of superior fiber properties.Plant communications · 2024Article
- TCOD: an integrated resource for tropical crops.Nucleic acids research · 2024Article
Corrections and comments
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Authors and funding
17 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The Banana Genome Hub provides centralized access for genome assemblies, annotations, and the extensive related omics resources available for bananas and banana relatives. A series of tools and unique interfaces are implemented to harness the potential of genomics in bananas, leveraging the power of comparative analysis, while recognizing the differences between datasets. Besides effective genomic tools like BLAST and the JBrowse genome browser, additional interfaces enable advanced gene search and gene family analyses including multiple alignments and phylogenies. A synteny viewer enables the comparison of genome structures between chromosome-scale assemblies. Interfaces for differential expression analyses, metabolic pathways and GO enrichment were also added. A catalogue of variants spanning the banana diversity is made available for exploration, filtering, and export to a wide variety of software. Furthermore, we implemented new ways to graphically explore gene presence-absence in pangenomes as well as genome ancestry mosaics for cultivated bananas. Besides, to guide the community in future sequencing efforts, we provide recommendations for nomenclature of locus tags and a curated list of public genomic resources (assemblies, resequencing, high density genotyping) and upcoming resources-planned, ongoing or not yet public. The Banana Genome Hub aims at supporting the banana scientific community for basic, translational, and applied research and can be accessed at https://banana-genome-hub.southgreen.fr.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.