Evidence map›Paper›PMID 36479148›Full record

ArticleiScience2022

Machine learning-based clustering and classification of mouse behaviors via respiratory patterns.

Emma Janke, Marina Zhang, Sang Eun Ryu, Janardhan P Bhattarai, Mary R Schreck, Andrew H Moberly, Wenqin Luo, Long Ding, Daniel W Wesson, Minghong Ma

Abstract read
In one paragraph

Article in iScience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. An update on spinal cord injury and diaphragm neuromotor control.Expert review of respiratory medicine · 2025
    Review
  5. Article
  6. Article
  7. Respiratory Coupled Oscillations as a Mechanism of Attention to the Olfactory Environment.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Emma JankeDepartment of Neuroscience, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.
Marina ZhangDepartment of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA 02142, USA.
Sang Eun RyuDepartment of Pharmacology & Therapeutics, University of Florida, College of Medicine, Gainesville, FL 32610, USA.
Janardhan P BhattaraiDepartment of Neuroscience, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.
Mary R SchreckDepartment of Neuroscience, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.
Andrew H MoberlyDepartment of Neuroscience, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.
Wenqin LuoDepartment of Neuroscience, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.
Long DingDepartment of Neuroscience, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.
Daniel W WessonDepartment of Pharmacology & Therapeutics, University of Florida, College of Medicine, Gainesville, FL 32610, USA.
Minghong MaDepartment of Neuroscience, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA.

Funding

Olfactory Modulation of Respiration-Entrained Brain Activity and BehaviorR01DC006213 · NIDCD · UNIVERSITY OF PENNSYLVANIA · PI MA, MINGHONG · 2005 to 2024
$8.2M
Striatal mechanisms for e-cigarette reinforcement by flavorantsR01DA049545 · NIDA · UNIVERSITY OF PENNSYLVANIA · PI DE BIASI, MARIELLA, MA, MINGHONG · 2019 to 2023
$3.2M
Novel Role of a Ventral Striatal Circuit in Motor ControlR01NS117061 · NINDS · UNIVERSITY OF PENNSYLVANIA · PI FUCCILLO, MARC V, MA, MINGHONG · 2021 to 2025
$2.4M
Circuitry and function of ventral striatum subregionsR01DA049449 · NIDA · UNIVERSITY OF FLORIDA · PI MA, MINGHONG, WESSON, DANIEL W · 2020 to 2024
$2.1M
Circuitry and function of the NLOT in olfactory-guided behaviorsR21DC019193 · NIDCD · UNIVERSITY OF PENNSYLVANIA · PI BHATTARAI, JANARDHAN PRASAD · 2021 to 2023
$477k
Elucidating Central Neural Mechanisms in an Apnea ModelF31MH124372 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI JANKE, EMMA CATHERINE · 2021 to 2022
$91k
NIDA NIH HHS R01 DA049449NIDA NIH HHS R01 DA049545NIDCD NIH HHS R01 DC006213NIDCD NIH HHS R21 DC019193NIMH NIH HHS F31 MH124372NINDS NIH HHS R01 NS117061
6 · The paper itself

Abstract

Breathing is dynamically modulated by metabolic needs as well as by emotional states. Even though rodents are invaluable models for investigating the neural control of respiration, current literature lacks systematic characterization of breathing dynamics across a broad spectrum of rodent behaviors. Here we uncover a wide diversity in breathing patterns across spontaneous, attractive odor-, stress-, and fear-induced behaviors in mice. Direct recordings of intranasal pressure afford more detailed respiratory information than more traditional whole-body plethysmography. K-means clustering groups 11 well-defined behavioral states into four clusters with distinct key respiratory features. Furthermore, we implement RUSBoost (random undersampling boost) classification, a supervised machine learning model, and find that breathing patterns can separate these behaviors with an accuracy of 80%. Taken together, our findings highlight the tight relationship between breathing and behavior and the potential use of breathing patterns to aid in distinguishing similar behaviors and inform about their internal states.

Indexed as

Artificial intelligenceBehavioral neuroscienceNeuroscience

Identifiers

PMID36479148
PMCPMC9720017

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.