Evidence map›Paper›PMID 36478156›Full record

ArticleMemorias do Instituto Oswaldo Cruz2022

Fast surveillance response reveals the introduction of a new yellow fever virus sub-lineage in 2021, in Minas Gerais, Brazil.

Miguel Souza Andrade, Fabrício Souza Campos, Cirilo Henrique de Oliveira, Ramon Silva Oliveira, Aline Alves Scarpellini Campos, Marco Antônio Barreto de Almeida, Vagner de Souza Fonseca, Danilo Simonini-Teixeira, Anaiá da Paixão Sevá, Andrea Oliveira Dias Temponi and 18 more

Open access · diamondAbstract read
In one paragraph

Article in Memorias do Instituto Oswaldo Cruz, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 23 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors at 9 institutions in 3 countries.

Miguel Souza AndradeUniversidade de Brasília, Instituto de Ciências Biológicas, Departamento de Biologia Celular, Laboratório de Baculovírus, Brasília, DF, Brasil.
Fabrício Souza CamposUniversidade Federal do Tocantins, Laboratório de Bioinformática e Biotecnologia, Gurupi, TO, Brasil.ORCID http://orcid.org/0000-0002-5948-472X
Cirilo Henrique de OliveiraInstituto Federal do Norte de Minas Gerais, Laboratório de Comportamento de Insetos, Salinas, MG, Brasil.
Ramon Silva OliveiraInstituto Federal do Norte de Minas Gerais, Laboratório de Comportamento de Insetos, Salinas, MG, Brasil.
Aline Alves Scarpellini CamposSecretaria Estadual de Saúde do Rio Grande do Sul, Centro Estadual de Vigilância em Saúde, Porto Alegre, RS, Brasil.
Marco Antônio Barreto de AlmeidaSecretaria Estadual de Saúde do Rio Grande do Sul, Centro Estadual de Vigilância em Saúde, Porto Alegre, RS, Brasil.
Vagner de Souza FonsecaOrganização Pan-Americana da Saúde/Organização Mundial da Saúde, Brasília, DF, Brasil.
Danilo Simonini-TeixeiraUniversidade Estadual de Santa Cruz, Departamento de Agricultura e Ciências Ambientais, Ilhéus, BA, Brasil.
Anaiá da Paixão SeváUniversidade Estadual de Santa Cruz, Departamento de Agricultura e Ciências Ambientais, Ilhéus, BA, Brasil.
Andrea Oliveira Dias TemponiSecretaria de Saúde do Estado de Minas Gerais, Coordenação Estadual de Vigilância de Arbovírus, Belo Horizonte, MG, Brasil.
Fernando Maria MagalhãesSecretaria de Saúde do Estado de Minas Gerais, Coordenação Estadual de Vigilância de Arbovírus, Belo Horizonte, MG, Brasil.
Danielle Costa Capistrano ChavesSecretaria de Saúde do Estado de Minas Gerais, Coordenação Estadual de Vigilância de Arbovírus, Belo Horizonte, MG, Brasil.
Maira Alves PereiraFundação Ezequiel Dias, Laboratório Central de Saúde Pública, Belo Horizonte, MG, Brasil.
Ludmila Oliveira LamounierFundação Ezequiel Dias, Laboratório Central de Saúde Pública, Belo Horizonte, MG, Brasil.
Givaldo Gomes de MenezesSecretaria de Saúde do Estado de Minas Gerais, Coordenação Estadual de Vigilância de Arbovírus, Belo Horizonte, MG, Brasil.
Sandy Micaele Aquino-TeixeiraInstituto Federal do Norte de Minas Gerais, Laboratório de Comportamento de Insetos, Salinas, MG, Brasil.
Maria Eduarda Gonçalves-Dos-SantosInstituto Federal do Norte de Minas Gerais, Laboratório de Comportamento de Insetos, Salinas, MG, Brasil.
Sofía Bernal-ValleUniversidade Estadual de Santa Cruz, Departamento de Agricultura e Ciências Ambientais, Ilhéus, BA, Brasil.
Nicolas Felipe Drumm MüllerUniversidade Federal do Rio Grande do Sul, Instituto de Ciências Básicas da Saúde, Porto Alegre, RS, Brasil.
Jader da Cruz CardosoSecretaria Estadual de Saúde do Rio Grande do Sul, Centro Estadual de Vigilância em Saúde, Porto Alegre, RS, Brasil.
Edmilson Dos SantosSecretaria Estadual de Saúde do Rio Grande do Sul, Centro Estadual de Vigilância em Saúde, Porto Alegre, RS, Brasil.
Maria Angélica Mares-GuiaFundação Oswaldo Cruz-Fiocruz, Instituto Oswaldo Cruz, Laboratório de Flavivírus, Rio de Janeiro, RJ, Brasil.
George Rêgo AlbuquerqueUniversidade Estadual de Santa Cruz, Departamento de Agricultura e Ciências Ambientais, Ilhéus, BA, Brasil.
Alessandro Pecego Martins RomanoMinistério da Saúde, Coordenação Geral de Vigilância de Arbovírus, Brasília, DF, Brasil.
Ana Cláudia FrancoUniversidade Federal do Rio Grande do Sul, Instituto de Ciências Básicas da Saúde, Porto Alegre, RS, Brasil.
Bergmann Morais RibeiroUniversidade de Brasília, Instituto de Ciências Biológicas, Departamento de Biologia Celular, Laboratório de Baculovírus, Brasília, DF, Brasil.
Paulo Michel RoeheUniversidade Federal do Rio Grande do Sul, Instituto de Ciências Básicas da Saúde, Porto Alegre, RS, Brasil.
Filipe Vieira Santos de AbreuInstituto Federal do Norte de Minas Gerais, Laboratório de Comportamento de Insetos, Salinas, MG, Brasil.ORCID http://orcid.org/0000-0001-9768-4688
Secretaria da Saúde · BRInstituto Federal de Educação Ciência e Tecnologia do Norte de Minas Gerais · BRUniversidade Estadual de Santa Cruz · BRUniversidade Federal do Rio Grande do Sul · BREzequiel Dias Foundation · BRUniversidade de Brasília · BRFundação Oswaldo Cruz · BRMinistério da Saúde · BRStellenbosch University · ZA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIn Brazil, the yellow fever virus (YFV) is maintained in a sylvatic cycle involving wild mosquitoes and non-human primates (NHPs). The virus is endemic to the Amazon region; however, waves of epidemic expansion reaching other Brazilian states sporadically occur, eventually causing spillovers to humans.

objectivesTo report a surveillance effort that led to the first confirmation of YFV in NHPs in the state of Minas Gerais (MG), Southeast region, in 2021.

methodsA surveillance network was created, encompassing the technology of smartphone applications and coordinated actions of several research institutions and health services to monitor and investigate NHP epizootics.

findingsWhen alerts were spread through the network, samples from NHPs were collected and YFV infection confirmed by reverse transcription-quantitative polymerase chain reaction (RT-qPCR) and genome sequencing at an interval of only 10 days. Near-complete genomes were generated using the Nanopore MinION sequencer. Phylogenetic analysis indicated that viral genomes were related to the South American genotype I, clustering with a genome detected in the Amazon region (state of Pará) in 2017, named YFVPA/MG sub-lineage. Fast YFV confirmation potentialised vaccination campaigns. MAIN

conclusionsA new YFV introduction was detected in MG 6 years after the beginning of the major outbreak reported in the state (2015-2018). The YFV strain was not related to the sub-lineages previously reported in MG. No human cases have been reported, suggesting the importance of coordinated surveillance of NHPs using available technologies and supporting laboratories to ensure a quick response and implementation of contingency measures to avoid YFV spillover to humans.

Indexed as

Yellow fever virusBrazilPhylogeny

Identifiers

PMID36478156
PMCPMC9718055
OpenAlexW4311589439

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.