Evidence map›Paper›PMID 36477445›Full record

ArticlePloS one2022

Using runaway replication to express polyhydroxyalkanoic acid (pha) genes from a novel marine bacterium in enteric bacteria: The influence of temperature and phasins on PHA accumulation.

Dana Kolibachuk, Benjamin J Ryder, Edward R Lyons, Ariel Woolsey, Margaret K Lopes, Keya Thakkar, Mayelin Pacheco Nunez, Michaela Duquenoy, Nevan R Valente, Ashley Nieves

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 94% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Dana KolibachukBiology Department, Rhode Island College, Providence, Rhode Island, United States of America.ORCID 0000-0002-9281-2174
Benjamin J RyderBiology Department, Rhode Island College, Providence, Rhode Island, United States of America.
Edward R LyonsBiology Department, Rhode Island College, Providence, Rhode Island, United States of America.
Ariel WoolseyBiology Department, Rhode Island College, Providence, Rhode Island, United States of America.
Margaret K LopesBiology Department, Rhode Island College, Providence, Rhode Island, United States of America.
Keya ThakkarBiology Department, Rhode Island College, Providence, Rhode Island, United States of America.
Mayelin Pacheco NunezBiology Department, Rhode Island College, Providence, Rhode Island, United States of America.
Michaela DuquenoyBiology Department, Rhode Island College, Providence, Rhode Island, United States of America.
Nevan R ValenteBiology Department, Rhode Island College, Providence, Rhode Island, United States of America.
Ashley NievesBiology Department, Rhode Island College, Providence, Rhode Island, United States of America.
Providence College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While plastics have revolutionized our world, plastic waste has serious environmental and economic impacts. Polyhydroxyalkanoic acid (PHA) is a bacterial carbon and energy reserve shown to be both biodegradable and biocompatible and could potentially replace conventional plastics. However, cost-effective mass production remains elusive. Bacteria often accumulate PHA as cytoplasmic granules. PHA synthase creates the PHA polymer from acetoacyl-CoA monomers, while phasins are small multifunctional proteins that are found in abundance on the granule surface. The PHA synthase gene from a novel marine isolate, Vibrio B-18 (or B-18), was placed in the presence or absence of an upstream phasin gene in a runaway replication plasmid using polymerase chain reaction (PCR) technology. Plasmid gene expression may be induced chemically or thermally. Overexpression of the PHA genes was demonstrated by SDS-PAGE analysis, and microscopy was used to detect PHA accumulation in three different enteric bacteria (Escherichia coli, Klebsiella aerogenes, and Shigella flexneri). While the B-18 genes were clearly overexpressed at 41°C, PHA accumulation occurred more readily at the lower (30°C) non-inducing temperature regardless of chemical induction if the phasin gene was present. A mutational analysis confirmed the identity of the start codon for the PHA synthase gene and provided evidence supporting the requirement for phasins to allow for PHA accumulation in the recombinant hosts. The findings described in this study confirm the conclusions obtained from related studies from other laboratories and lend support to the importance of including a phasin gene in addition to the basic genes needed for PHA synthesis and accumulation in recombinant enteric bacteria, such as Escherichia coli, Klebsiella aerogenes, and Shigella flexneri.

Indexed as

Gastrointestinal MicrobiomeBacteriaEscherichia coliMicroscopy

Identifiers

PMID36477445
PMCPMC9728866
OpenAlexW4311583698

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.