Evidence map›Paper›PMID 36477361›Full record

ArticleJCI insight2022

An ELF4 hypomorphic variant results in NK cell deficiency.

Sandra Andrea Salinas, Emily M Mace, Matilde I Conte, Chun Shik Park, Yu Li, Joshua I Rosario-Sepulveda, Sanjana Mahapatra, Emily K Moore, Evelyn R Hernandez, Ivan K Chinn and 12 more

Open access · goldAbstract read
In one paragraph

Article in JCI insight, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. A novel ELF4 gene variant disrupts T and NK cell function in a patient with immune thrombocytopenia (ITP).Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2026
    Article
  3. A truncatingFrontiers in immunology · 2026
    Article
  4. Two novel frameshift variations in theTranslational pediatrics · 2025
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. [Two Cases of Behcet's Disease-Like Syndrome with Gene Deficiency inSichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition · 2024
    Article
  11. Review
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 4 institutions in 1 country.

Sandra Andrea SalinasDepartment of Pediatrics, Baylor College of Medicine, Texas Children's Hospital, Houston, Texas, USA.
Emily M MaceDepartment of Pediatrics, Columbia University Irving Medical Center, New York, New York, USA.
Matilde I ConteDepartment of Pediatrics, Columbia University Irving Medical Center, New York, New York, USA.
Chun Shik ParkDepartment of Pathology & Immunology.
Yu LiDepartment of Pediatrics, Baylor College of Medicine, Texas Children's Hospital, Houston, Texas, USA.
Joshua I Rosario-SepulvedaDepartment of Biochemistry.
Sanjana MahapatraDepartment of Pediatrics, Baylor College of Medicine, Texas Children's Hospital, Houston, Texas, USA.
Emily K MooreDepartment of Pediatrics, Columbia University Irving Medical Center, New York, New York, USA.
Evelyn R HernandezDepartment of Pediatrics, Columbia University Irving Medical Center, New York, New York, USA.
Ivan K ChinnDepartment of Pediatrics, Baylor College of Medicine, Texas Children's Hospital, Houston, Texas, USA.
Abigail E ReedDepartment of Pediatrics, Columbia University Irving Medical Center, New York, New York, USA.
Barclay J LeeDepartment of Pediatrics, Columbia University Irving Medical Center, New York, New York, USA.
Alexander FrumovitzDepartment of Pediatrics, Baylor College of Medicine, Texas Children's Hospital, Houston, Texas, USA.
Richard A GibbsDepartment of Molecular and Human Genetics, and.
Jennifer E PoseyDepartment of Molecular and Human Genetics, and.
Lisa R Forbes SatterDepartment of Pediatrics, Baylor College of Medicine, Texas Children's Hospital, Houston, Texas, USA.
Akaluck ThatayatikomDivision of Pediatric Allergy, Immunology, and Rheumatology, Department of Pediatrics, University of Florida, Shands Children's Hospital, Gainesville, Florida, USA.
Eric J AllenspachDivision of Immunology, Seattle Children's Hospital, Seattle, Washington, USA.
Theodore G WenselDepartment of Biochemistry.
James R LupskiDepartment of Pediatrics, Baylor College of Medicine, Texas Children's Hospital, Houston, Texas, USA.
H Daniel LacorazzaDepartment of Pathology & Immunology.
Jordan S OrangeDepartment of Pediatrics, Columbia University Irving Medical Center, New York, New York, USA.
Baylor College of Medicine · USColumbia University Irving Medical Center · USSeattle Children's Hospital · USUF Health Shands Hospital · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007367 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI REINER, STEVEN L · 1985 to 2021
$25.1M
Baylor-Johns Hopkins Center for Mendelian GeneticsUM1HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2016 to 2020
$14.5M
Frequency of variants of unknown significance by ancestry groups in the All of Us Research Program cohortU01HG011758 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI RICHARD A GIBBS, JAMES R. LUPSKI · 2021 to 2026
$13.8M
Initiative for Maximizing Student Development (IMSD) ProgramR25GM056929 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI PEREIRA, FRED A · 1998 to 2023
$12.4M
HOUSTON AREA MOLECULAR BIOPHYSICS TRAINING PROGRAMT32GM008280 · NIGMS · RICE UNIVERSITY · PI WENSEL, THEODORE G · 1988 to 2023
$8.0M
GENETIC, IMMUNOLOGIC AND MECHANISTIC BASIS OF HUMAN NK CELL DEFICIENCYR01AI120989 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ORANGE, JORDAN SCOTT · 2016 to 2025
$7.7M
Directing Function at the Natural Killer Cell Secretory Immunological SynapseR01AI067946 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ORANGE, JORDAN SCOTT · 2007 to 2019
$4.8M
Cilium-Associated Structures in Rod CellsR01EY026545 · NEI · BAYLOR COLLEGE OF MEDICINE · PI WENSEL, THEODORE G · 2016 to 2024
$3.7M
Training Program in Translational Biology and Molecular MedicineT32GM088129 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI ROONEY, CLIONA M., VAN DEN VEYVER, IGNATIA B · 2010 to 2019
$3.0M
DETERMINING THE ROLE OF THE REPLICATIVE HELICASE IN HUMAN NK CELL DEVELOPMENTR01AI137275 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MACE, EMILY MARGARET · 2018 to 2022
$1.9M
Mechanisms of KLF4 suppression in pediatric leukemiaR01CA207086 · NCI · BAYLOR COLLEGE OF MEDICINE · PI LACORAZZA, DANIEL · 2017 to 2021
$1.8M
Directing Function at the Natural Killer Cell Secretory Immunological SynapseR37AI067946 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Jordan Scott Orange · 2024 to 2026
$1.5M
NCI NIH HHS R01 CA207086NEI NIH HHS R01 EY026545NHGRI NIH HHS K08 HG008986NHGRI NIH HHS U01 HG011758NHGRI NIH HHS UM1 HG006542NIAID NIH HHS R01 AI067946NIAID NIH HHS R01 AI120989NIAID NIH HHS R01 AI137275NIAID NIH HHS R37 AI067946NIAID NIH HHS R56 AI067946NIGMS NIH HHS R25 GM056929NIGMS NIH HHS T32 GM007367NIGMS NIH HHS T32 GM008280NIGMS NIH HHS T32 GM088129NIH HHS S10 OD026845
6 · The paper itself

Abstract

NK cell deficiencies (NKD) are a type of primary immune deficiency in which the major immunologic abnormality affects NK cell number, maturity, or function. Since NK cells contribute to immune defense against virally infected cells, patients with NKD experience higher susceptibility to chronic, recurrent, and fatal viral infections. An individual with recurrent viral infections and mild hypogammaglobulinemia was identified to have an X-linked damaging variant in the transcription factor gene ELF4. The variant does not decrease expression but disrupts ELF4 protein interactions and DNA binding, reducing transcriptional activation of target genes and selectively impairing ELF4 function. Corroborating previous murine models of ELF4 deficiency (Elf4-/-) and using a knockdown human NK cell line, we determined that ELF4 is necessary for normal NK cell development, terminal maturation, and function. Through characterization of the NK cells of the proband, expression of the proband's variant in Elf4-/- mouse hematopoietic precursor cells, and a human in vitro NK cell maturation model, we established this ELF4 variant as a potentially novel cause of NKD.

Indexed as

Transcription FactorsAnimalsDNA-Binding ProteinsHumansKiller Cells, NaturalMiceDNA-Binding ProteinsELF4 protein, humanElf4 protein, mouseTranscription FactorsCell BiologyImmunologyInnate immunityMonogenic diseasesNK cells

Identifiers

PMID36477361
PMCPMC9746917
OpenAlexW4311829230

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.