Evidence map›Paper›PMID 36476204›Full record

ArticleBMC veterinary research2022

Genetic analysis of genome sequence characteristics of two lumpy skin disease viruses isolated from China.

Lin Li, Zhenzhong Wang, Chuanxiang Qi, Shan Liu, Mingxia Gong, Jinming Li, Xiaodong Wu, Zhiliang Wang

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Lin Li *China Animal Health and Epidemiology Center, Qingdao, 266032, Shandong, China.
Zhenzhong Wang *China Animal Health and Epidemiology Center, Qingdao, 266032, Shandong, China.
Chuanxiang QiChina Animal Health and Epidemiology Center, Qingdao, 266032, Shandong, China.
Shan LiuChina Animal Health and Epidemiology Center, Qingdao, 266032, Shandong, China.
Mingxia GongChina Animal Health and Epidemiology Center, Qingdao, 266032, Shandong, China.
Jinming LiChina Animal Health and Epidemiology Center, Qingdao, 266032, Shandong, China.
Xiaodong WuChina Animal Health and Epidemiology Center, Qingdao, 266032, Shandong, China.
Zhiliang WangChina Animal Health and Epidemiology Center, Qingdao, 266032, Shandong, China. wuxiaodong@cahec.cn.
China Animal Health and Epidemiology Center · CNNanjing Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLumpy skin disease (LSD) is an acute or subacute infectious disease caused by lumpy skin disease virus (LSDV) of genus Capripoxvirus. The outbreaks of LSD were confirmed in the Yili area of the Xinjiang autonomous region in August 2019 and the Fujian province in June 2020. We detected LSDV in our daily monitoring work, then isolated, identified and sequenced the virus, and analyzed the whole genome characteristics of the isolated strain.

resultsWhole genome sequencing revealed that the strains isolated were all LSDV and were named as LSDV XJ201901 and LSDV FJ2019. The results showed that the identity based on whole genome sequences between LSDV XJ201901 and LSDV FJ2019 was 100% and the identity based on whole genome sequences between the two isolated strains and the global LSDV strains was 97.28%-99.99%, with the strain LSDV72/PrachuapKhiriKhan/Thailand/2021 (99.99%) having the highest sequence identity. Analysis of potential recombination events revealed that a total of 18 potential recombination events were identified in strains LSDV XJ201901 and LSDV FJ2019. The two strains are a recombination of Neethling vaccine LW 1959 (GeneBank: AF409138.1) with KSGP 0240 (GeneBank: KX683219.1). It was observed that Neethling vaccine LW 1959 (11/18) and KSGP 0240 (10/18) are involved in most of the potential recombination events.

conclusionsThe virus isolate in this study was LSDV and was identified as a vaccine recombinant strain. The most likely potential parent strains of the two strains in this study are Neethling vaccine LW 1959 and KSGP 0240. The strains in this study are very similar to those isolated in East and Southeast Asia since 2019.

Indexed as

Cattle DiseasesLumpy Skin DiseaseLumpy skin disease virusVaccinesAnimalsCattleChinaThailandVaccinesChinaGenetic analysisGenome sequenceLSDV

Identifiers

PMID36476204
PMCPMC9727994
OpenAlexW4311583437

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.