Evidence map›Paper›PMID 36475774›Full record

ArticlemBio2023

Taxonomic and Metagenomic Analyses Define the Development of the Microbiota in the Chick.

Lydia Bogomolnaya, Marissa Talamantes, Joana Rocha, Aravindh Nagarajan, Wenhan Zhu, Luisella Spiga, Maria G Winter, Kranti Konganti, L Garry Adams, Sebastian Winter and 1 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in mBio, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Review
  3. When Everything Becomes Bigger: Big Data for Big Poultry Production.Animals : an open access journal from MDPI · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Lydia BogomolnayaDepartment of Microbial Pathogenesis and Immunology, Texas A&M University, College Station, Texas, USA.
Marissa TalamantesDepartment of Microbial Pathogenesis and Immunology, Texas A&M University, College Station, Texas, USA.
Joana RochaDepartment of Microbial Pathogenesis and Immunology, Texas A&M University, College Station, Texas, USA.
Aravindh NagarajanDepartment of Microbial Pathogenesis and Immunology, Texas A&M University, College Station, Texas, USA.
Wenhan ZhuDepartment of Microbiology and Immunology, UT Southwestern Medical Center, Dallas, Texas, USA.ORCID 0000-0003-3771-0842
Luisella SpigaDepartment of Microbiology and Immunology, UT Southwestern Medical Center, Dallas, Texas, USA.
Maria G WinterDepartment of Microbiology and Immunology, UT Southwestern Medical Center, Dallas, Texas, USA.
Kranti KongantiDepartment of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M, College Station, Texas, USA.
L Garry AdamsDepartment of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M, College Station, Texas, USA.
Sebastian WinterDepartment of Microbiology and Immunology, UT Southwestern Medical Center, Dallas, Texas, USA.ORCID 0000-0003-1532-9178
Helene Andrews-PolymenisDepartment of Microbial Pathogenesis and Immunology, Texas A&M University, College Station, Texas, USA.ORCID 0000-0002-1818-1335
Texas A&M University · USSouthwestern Medical Center · USVanderbilt University · USMarshall University · US

Funding

Central metabolism of Salmonella in the inflamed gutR01AI118807 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Sebastian E Winter · 2015 to 2026
$5.3M
Commensal resilience mechanisms in the inflamed intestineR35GM147470 · NIGMS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Wenhan Zhu · 2022 to 2026
$2.2M
Commensal bacteria resilience mechanisms in the inflamed intestineR01DK134692 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Wenhan Zhu · 2023 to 2026
$1.4M
Glutarate metabolism in SalmonellaR21AI166263 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI WINTER, SEBASTIAN E · 2021 to 2022
$444k
Metabolic Interactions between Salmonella and E. coli Nissle 1917R21AI171537 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI WINTER, SEBASTIAN E · 2022 to 2023
$439k
NIAID NIH HHS R01 AI118807NIAID NIH HHS R21 AI166263NIDDK NIH HHS R01 DK134692
6 · The paper itself

Abstract

Chicks are ideal to follow the development of the intestinal microbiota and to understand how a pathogen perturbs this developing population. Taxonomic/metagenomic analyses captured the development of the chick microbiota in unperturbed chicks and in chicks infected with Salmonella enterica serotype Typhimurium (STm) during development. Taxonomic analysis suggests that colonization by the chicken microbiota takes place in several waves. The cecal microbiota stabilizes at day 12 posthatch with prominent

Indexed as

MicrobiotaPoultry DiseasesSalmonella Infections, AnimalAmino Acids, Branched-ChainAnimalsCecumChickensIsoleucineSalmonella typhimuriumValineAmino Acids, Branched-ChainIsoleucineValinebranched-chain amino acidschickensmicrobiota developmentpathogenSalmonella

Identifiers

PMID36475774
PMCPMC9973254
OpenAlexW4310958455

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.