Evidence map›Paper›PMID 36474136›Full record

ArticleBMC bioinformatics2022

RSAP-Net: joint optic disc and cup segmentation with a residual spatial attention path module and MSRCR-PT pre-processing algorithm.

Yun Jiang, Zeqi Ma, Chao Wu, Zequn Zhang, Wei Yan

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Article in BMC bioinformatics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

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4citing papers in PubMed, 1 pooled it
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4 citing papers in PubMed, 1 synthesis or guideline pooled it.

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5 · Who and what money

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5 authors.

Yun JiangDepartment of Computer Science and Engineering, Northwest Normal University, Lanzhou, China.
Zeqi MaDepartment of Computer Science and Engineering, Northwest Normal University, Lanzhou, China. 2019221847@nwnu.edu.cn.
Chao WuDepartment of Computer Science and Engineering, Northwest Normal University, Lanzhou, China.
Zequn ZhangDepartment of Computer Science and Engineering, Northwest Normal University, Lanzhou, China.
Wei YanDepartment of Computer Science and Engineering, Northwest Normal University, Lanzhou, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGlaucoma can cause irreversible blindness to people's eyesight. Since there are no symptoms in its early stage, it is particularly important to accurately segment the optic disc (OD) and optic cup (OC) from fundus medical images for the screening and prevention of glaucoma. In recent years, the mainstream method of OD and OC segmentation is convolution neural network (CNN). However, most existing CNN methods segment OD and OC separately and ignore the a priori information that OC is always contained inside the OD region, which makes the segmentation accuracy of most methods not high enough.

methodsThis paper proposes a new encoder-decoder segmentation structure, called RSAP-Net, for joint segmentation of OD and OC. We first designed an efficient U-shaped segmentation network as the backbone. Considering the spatial overlap relationship between OD and OC, a new Residual spatial attention path is proposed to connect the encoder-decoder to retain more characteristic information. In order to further improve the segmentation performance, a pre-processing method called MSRCR-PT (Multi-Scale Retinex Colour Recovery and Polar Transformation) has been devised. It incorporates a multi-scale Retinex colour recovery algorithm and a polar coordinate transformation, which can help RSAP-Net to produce more refined boundaries of the optic disc and the optic cup.

resultsThe experimental results show that our method achieves excellent segmentation performance on the Drishti-GS1 standard dataset. In the OD and OC segmentation effects, the F1 scores are 0.9752 and 0.9012, respectively. The BLE are 6.33 pixels and 11.97 pixels, respectively.

conclusionsThis paper presents a new framework for the joint segmentation of optic discs and optic cups, called RSAP-Net. The framework mainly consists of a U-shaped segmentation skeleton and a residual space attention path module. The design of a pre-processing method called MSRCR-PT for the OD/OC segmentation task can improve segmentation performance. The method was evaluated on the publicly available Drishti-GS1 standard dataset and proved to be effective.

Indexed as

GlaucomaOptic DiskHumansAttention mechanismConvolutional neural workGlaucoma screeningJoint optic disc and cup segmentationPre-processingRetinex theory

Identifiers

PMID36474136
PMCPMC9727976

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.