Evidence map›Paper›PMID 36473839›Full record

ArticleNature communications2022

The role of auxiliary domains in modulating CHD4 activity suggests mechanistic commonality between enzyme families.

Yichen Zhong, Hakimeh Moghaddas Sani, Bishnu P Paudel, Jason K K Low, Ana P G Silva, Stefan Mueller, Chandrika Deshpande, Santosh Panjikar, Xavier J Reid, Max J Bedward and 2 more

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Human mutation · 2026
    Review
  6. Article
  7. How does CHD4 slide nucleosomes?Biochemical Society transactions · 2024
    Review
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Yichen ZhongSchool of Life and Environmental Sciences, University of Sydney, The University of Sydney, NSW, 2006, Australia.
Hakimeh Moghaddas Sani *School of Life and Environmental Sciences, University of Sydney, The University of Sydney, NSW, 2006, Australia.
Bishnu P Paudel *Molecular Horizons, School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, NSW, 2522, Australia.
Jason K K LowSchool of Life and Environmental Sciences, University of Sydney, The University of Sydney, NSW, 2006, Australia.ORCID 0000-0003-0862-0012
Ana P G SilvaSchool of Life and Environmental Sciences, University of Sydney, The University of Sydney, NSW, 2006, Australia.
Stefan MuellerMolecular Horizons, School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, NSW, 2522, Australia.ORCID 0000-0002-0930-2000
Chandrika DeshpandeSchool of Life and Environmental Sciences, University of Sydney, The University of Sydney, NSW, 2006, Australia.
Santosh PanjikarAustralian Synchrotron, Clayton, VIC, 3168, Australia.ORCID 0000-0001-7429-3879
Xavier J ReidSchool of Life and Environmental Sciences, University of Sydney, The University of Sydney, NSW, 2006, Australia.
Max J BedwardSchool of Life and Environmental Sciences, University of Sydney, The University of Sydney, NSW, 2006, Australia.
Antoine M van OijenMolecular Horizons, School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong, NSW, 2522, Australia. vanoijen@uow.edu.au.ORCID 0000-0002-1794-5161
Joel P MackaySchool of Life and Environmental Sciences, University of Sydney, The University of Sydney, NSW, 2006, Australia. joel.mackay@sydney.edu.au.ORCID 0000-0001-7508-8033

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CHD4 is an essential, widely conserved ATP-dependent translocase that is also a broad tumour dependency. In common with other SF2-family chromatin remodelling enzymes, it alters chromatin accessibility by repositioning histone octamers. Besides the helicase and adjacent tandem chromodomains and PHD domains, CHD4 features 1000 residues of N- and C-terminal sequence with unknown structure and function. We demonstrate that these regions regulate CHD4 activity through different mechanisms. An N-terminal intrinsically disordered region (IDR) promotes remodelling integrity in a manner that depends on the composition but not sequence of the IDR. The C-terminal region harbours an auto-inhibitory region that contacts the helicase domain. Auto-inhibition is relieved by a previously unrecognized C-terminal SANT-SLIDE domain split by ~150 residues of disordered sequence, most likely by binding of this domain to substrate DNA. Our data shed light on CHD4 regulation and reveal strong mechanistic commonality between CHD family members, as well as with ISWI-family remodellers.

Indexed as

Mitochondrial ADP, ATP TranslocasesMitochondrial ADP, ATP Translocases

Identifiers

PMID36473839
PMCPMC9726900

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.