Evidence map›Paper›PMID 36472530›Full record

ArticleMolecular biology and evolution2022

Epistatic Effects Between Amino Acid Insertions and Substitutions Mediate Toxin resistance of Vertebrate Na+,K+-ATPases.

Shabnam Mohammadi, Halil İbrahim Özdemir, Pemra Ozbek, Fidan Sumbul, Josefin Stiller, Yuan Deng, Andrew J Crawford, Hannah M Rowland, Jay F Storz, Peter Andolfatto and 1 more

RetractedOpen access · goldAbstract readRetracted Publication
In one paragraph

Article in Molecular biology and evolution, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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  3. A fixed mutation in the respiratory complex I impairs mitochondrial bioenergetics in the endangered Apennine brown bear.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  4. Review
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  8. Article
  9. Tissue-specific plant toxins and adaptation in a specialist root herbivore.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 9 institutions in 7 countries.

Shabnam MohammadiMolecular Evolutionary Biology, Institute of Cell and Systems Biology of Animals, Universität Hamburg, Hamburg 20146, Germany.
Halil İbrahim ÖzdemirDepartment of Bioengineering, Marmara University, Göztepe, İstanbul 34722, Turkey.
Pemra OzbekDepartment of Bioengineering, Marmara University, Göztepe, İstanbul 34722, Turkey.ORCID 0000-0002-3043-0015
Fidan SumbulINSERM, Aix-Marseille Université, Inserm, CNRS, Marseille 13009, France.
Josefin StillerVillum Centre for Biodiversity Genomics, University of Copenhagen, Copenhagen 2100, Denmark.
Yuan DengVillum Centre for Biodiversity Genomics, University of Copenhagen, Copenhagen 2100, Denmark.
Andrew J CrawfordDepartment of Biological Sciences, Universidad de los Andes, Bogotá, Colombia.
Hannah M RowlandMax Planck Institute for Chemical Ecology, Research Group Predators and Toxic Prey, Jena 07745, Germany.ORCID 0000-0002-1040-555X
Jay F StorzSchool of Biological Sciences, University of Nebraska, Lincoln, NE.ORCID 0000-0001-5448-7924
Peter AndolfattoDepartment of Biological Sciences, Columbia University, New York, NY.
Susanne DoblerMolecular Evolutionary Biology, Institute of Cell and Systems Biology of Animals, Universität Hamburg, Hamburg 20146, Germany.
Marmara University · TRUniversität Hamburg · DEBGI Group (China) · CNCentre National de la Recherche Scientifique · FRColumbia University · USMax Planck Institute for Chemical Ecology · DEUniversidad de Los Andes · COUniversity of Copenhagen · DKUniversity of Nebraska–Lincoln · US

Funding

Mutational Pleiotropy, Epistasis, and the Adaptive Evolution of Hemoglobin FunctionR01HL087216 · NHLBI · UNIVERSITY OF NEBRASKA LINCOLN · PI STORZ, JAY · 2008 to 2021
$4.5M
Parallel evolution at Na,K-ATPase: a model system for understanding constraints on the evolution of novel protein functions.R01GM115523 · NIGMS · PRINCETON UNIVERSITY · PI ANDOLFATTO, PETER · 2015 to 2024
$2.8M
Epistasis as a source of contingency in the adaptive evolution of protein functionF32HL149172 · NHLBI · UNIVERSITY OF NEBRASKA LINCOLN · PI MOHAMMADI, SHABNAM · 2019 to 2021
$155k
NHLBI NIH HHS F32 HL149172NHLBI NIH HHS R01 HL087216NIGMS NIH HHS R01 GM115523NIH HHS F32-HL149172NIH HHS R01-GM115523
6 · The paper itself

Abstract

The recurrent evolution of resistance to cardiotonic steroids (CTS) across diverse animals most frequently involves convergent amino acid substitutions in the H1-H2 extracellular loop of Na+,K+-ATPase (NKA). Previous work revealed that hystricognath rodents (e.g., chinchilla) and pterocliform birds (sandgrouse) have convergently evolved amino acid insertions in the H1-H2 loop, but their functional significance was not known. Using protein engineering, we show that these insertions have distinct effects on CTS resistance in homologs of each of the two species that strongly depend on intramolecular interactions with other residues. Removing the insertion in the chinchilla NKA unexpectedly increases CTS resistance and decreases NKA activity. In the sandgrouse NKA, the amino acid insertion and substitution Q111R both contribute to an augmented CTS resistance without compromising ATPase activity levels. Molecular docking simulations provide additional insight into the biophysical mechanisms responsible for the context-specific mutational effects on CTS insensitivity of the enzyme. Our results highlight the diversity of genetic substrates that underlie CTS insensitivity in vertebrate NKA and reveal how amino acid insertions can alter the phenotypic effects of point mutations at key sites in the same protein domain.

Indexed as

Cardiac GlycosidesSodium-Potassium-Exchanging ATPaseAmino AcidsAnimalsChinchillaMolecular Docking SimulationVertebratesAmino AcidsCardiac GlycosidesSodium-Potassium-Exchanging ATPasecardiotonic steroidschinchillaindel evolutionNa+K+-ATPasesandgrouse

Identifiers

PMID36472530
PMCPMC9778839
OpenAlexW4310780833

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.