Evidence map›Paper›PMID 36472247›Full record

ArticleThe EMBO journal2023

Gut colonization by Bacteroides requires translation by an EF-G paralog lacking GTPase activity.

Weiwei Han, Bee-Zen Peng, Chunyan Wang, Guy E Townsend, Natasha A Barry, Frank Peske, Andrew L Goodman, Jun Liu, Marina V Rodnina, Eduardo A Groisman

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. A conserved peptidase governs glucose homeostasis inbioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Advancing the fitness of gut commensal bacteria.Science (New York, N.Y.) · 2023
    Article
  12. How Bacterial Pathogens Coordinate Appetite with Virulence.Microbiology and molecular biology reviews : MMBR · 2023
    Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Weiwei HanDepartment of Microbial Pathogenesis, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-0808-3483
Bee-Zen PengDepartment of Physical Biochemistry, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.ORCID 0000-0002-9832-8447
Chunyan WangDepartment of Microbial Pathogenesis, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0003-0574-006X
Guy E TownsendDepartment of Microbial Pathogenesis, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0002-8231-3769
Natasha A BarryDepartment of Microbial Pathogenesis, Yale School of Medicine, New Haven, CT, USA.
Frank PeskeDepartment of Physical Biochemistry, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.ORCID 0000-0003-3076-0409
Andrew L GoodmanDepartment of Microbial Pathogenesis, Yale School of Medicine, New Haven, CT, USA.
Jun LiuDepartment of Microbial Pathogenesis, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0003-3108-6735
Marina V RodninaDepartment of Physical Biochemistry, Max Planck Institute for Multidisciplinary Sciences, Göttingen, Germany.
Eduardo A GroismanDepartment of Microbial Pathogenesis, Yale School of Medicine, New Haven, CT, USA.ORCID 0000-0001-6860-7691
Yale University · USMax Planck Institute for the Study of Religious and Ethnic Diversity · DE

Funding

Inductive and morphogenetic processes shaping the zebrafish embryonic axesR35GM118179 · NIGMS · WASHINGTON UNIVERSITY · PI LILIANNA SOLNICAKREZEL · 2016 to 2026
$7.4M
Structure-Function Relationships in the Spirochetal Flagellar MotorR01AI087946 · NIAID · YALE UNIVERSITY · PI LIU, JUN · 2010 to 2025
$6.6M
Transition Metal Homeostasis and Reactive Sulfur Species in Bacterial PathogensR35GM118157 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI DAVID P. GIEDROC · 2016 to 2026
$5.9M
Causes and consequences of interpersonal microbial variationR35GM118159 · NIGMS · YALE UNIVERSITY · PI Andrew L Goodman · 2016 to 2026
$5.6M
Structural basis of phage infection and DNA ejectionR01GM110243 · NIGMS · YALE UNIVERSITY · PI LIU, JUN, MOLINEUX, IAN J · 2014 to 2024
$3.1M
Control of gut colonization by the prominent gut bacterium Bacteroides thetaiotaomicronR01GM123798 · NIGMS · YALE UNIVERSITY · PI GROISMAN, EDUARDO · 2018 to 2025
$2.7M
NIAID NIH HHS R01 AI087946NIGMS NIH HHS R01 GM110243NIGMS NIH HHS R01 GM123798NIGMS NIH HHS R35 GM118157NIGMS NIH HHS R35 GM118159NIGMS NIH HHS R35 GM118179
6 · The paper itself

Abstract

Protein synthesis is crucial for cell growth and survival yet one of the most energy-consuming cellular processes. How, then, do cells sustain protein synthesis under starvation conditions when energy is limited? To accelerate the translocation of mRNA-tRNAs through the ribosome, bacterial elongation factor G (EF-G) hydrolyzes energy-rich guanosine triphosphate (GTP) for every amino acid incorporated into a protein. Here, we identify an EF-G paralog-EF-G2-that supports translocation without hydrolyzing GTP in the gut commensal bacterium Bacteroides thetaiotaomicron. EF-G2's singular ability to sustain protein synthesis, albeit at slow rates, is crucial for bacterial gut colonization. EF-G2 is ~10-fold more abundant than canonical EF-G1 in bacteria harvested from murine ceca and, unlike EF-G1, specifically accumulates during carbon starvation. Moreover, we uncover a 26-residue region unique to EF-G2 that is essential for protein synthesis, EF-G2 dissociation from the ribosome, and responsible for the absence of GTPase activity. Our findings reveal how cells curb energy consumption while maintaining protein synthesis to advance fitness in nutrient-fluctuating environments.

Indexed as

BacteroidesPeptide Elongation Factor GAnimalsGuanosine TriphosphateHydrolysisMiceMitochondrial ProteinsRibosomesRNA, TransferGMF2 protein, mouseGuanosine TriphosphateMitochondrial ProteinsPeptide Elongation Factor GRNA, TransferBacteroides thetaiotaomicronelongation factor GGTP hydrolysisparalogous proteinsribosome

Identifiers

PMID36472247
PMCPMC9841332
OpenAlexW4310773975

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.