Evidence map›Paper›PMID 36471260›Full record

ArticleBMC genomics2022

Genomic landscape of prominent XDR Acinetobacter clonal complexes from Dhaka, Bangladesh.

Aura Rahman, Ashley Styczynski, Abdul Khaleque, Sakib Abrar Hossain, Abdus Sadique, Arman Hossain, Mukesh Jain, Syeda Naushin Tabassum, Fahad Khan, Mohammad Sami Salman Bhuiyan and 7 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 9 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. A brief insight intoFrontiers in antibiotics · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 3 countries.

Aura RahmanNSU Genome Research Institute, North South University, Dhaka, Bangladesh.
Ashley StyczynskiDivision of Infectious Diseases and Geographic Medicine, School of Medicine, Stanford University, Palo Alto, California, USA.
Abdul KhalequeDepartment of Biochemistry and Microbiology, North South University, Dhaka, Bangladesh.
Sakib Abrar HossainNSU Genome Research Institute, North South University, Dhaka, Bangladesh.
Abdus SadiqueNSU Genome Research Institute, North South University, Dhaka, Bangladesh.
Arman HossainDepartment of Biochemistry and Microbiology, North South University, Dhaka, Bangladesh.
Mukesh JainThe Hormone Lab & Infertility Centre, Dhaka, Bangladesh.
Syeda Naushin TabassumNSU Genome Research Institute, North South University, Dhaka, Bangladesh.
Fahad KhanNSU Genome Research Institute, North South University, Dhaka, Bangladesh.
Mohammad Sami Salman BhuiyanNSU Genome Research Institute, North South University, Dhaka, Bangladesh.
Jahidul AlamNSU Genome Research Institute, North South University, Dhaka, Bangladesh.
Amith KhandakarDepartment of Electrical Engineering, Qatar University, Doha, 2713, Qatar.
Mohammad KamruzzamanNational Institute of Cancer Research & Hospital, Dhaka, Bangladesh.
Chowdhury Rafiqul AhsanDepartment of Microbiology, University of Dhaka, Dhaka, Bangladesh.
Saad Bin Abul KashemDepartment of Computer Sciences, AFG College with the University of Aberdeen, Doha, Qatar. saad.kashem@afg-aberdeen.edu.qa.
Muhammad E H ChowdhuryDepartment of Electrical Engineering, Qatar University, Doha, 2713, Qatar. mchowdhury@qu.edu.qa.
Maqsud HossainNSU Genome Research Institute, North South University, Dhaka, Bangladesh. muhammad.maqsud@northsouth.edu.
North South University · BDQatar University · QABRAC · BDNational Institute of Cancer Research and Hospital · BDStanford University · USUniversity of Dhaka · BD

Funding

Research Mentoring and Building Capacity of underrepresented Minority Research Scientists in India.D43TW010540 · FIC · YALE UNIVERSITY · PI MICHELE BARRY, Eva Harris · 2017 to 2026
$15.5M
Global Epidemiology of Infectious DiseasesT32AI052073 · NIAID · STANFORD UNIVERSITY · PI Angelle Desiree LaBeaud, Stephen Patrick Luby · 2003 to 2026
$4.2M
FIC NIH HHS D43 TW010540NIAID NIH HHS T32 AI052073
6 · The paper itself

Abstract

backgroundAcinetobacter calcoaceticus-A. baumannii (ACB) complex pathogens are known for their prevalence in nosocomial infections and extensive antimicrobial resistance (AMR) capabilities. While genomic studies worldwide have elucidated the genetic context of antibiotic resistance in major international clones (ICs) of clinical Acinetobacter spp., not much information is available from Bangladesh. In this study, we analysed the AMR profiles of 63 ACB complex strains collected from Dhaka, Bangladesh. Following this, we generated draft genomes of 15 of these strains to understand the prevalence and genomic environments of AMR, virulence and mobilization associated genes in different Acinetobacter clones.

resultsAround 84% (n = 53) of the strains were extensively drug resistant (XDR) with two showing pan-drug resistance. Draft genomes generated for 15 strains confirmed 14 to be A. baumannii while one was A. nosocomialis. Most A. baumannii genomes fell under three clonal complexes (CCs): the globally dominant CC1 and CC2, and CC10; one strain had a novel sequence type (ST). AMR phenotype-genotype agreement was observed and the genomes contained various beta-lactamase genes including bla

conclusionThis study presents the first comparative genomic analysis of XDR clinical Acinetobacter spp. from Bangladesh. It highlights the prevalence of different classes of beta-lactamases, mobilome-derived heterogeneity in genetic architecture and virulence gene variability in prominent Acinetobacter clonal complexes in the country. The findings of this study would be valuable in understanding the genomic epidemiology of A. baumannii clones and their association with closely related pathogenic species like A. nosocomialis in Bangladesh.

Indexed as

Acinetobacter baumanniiAcinetobacter InfectionsAnti-Bacterial AgentsBacterial ProteinsDrug Resistance, Multiple, BacterialBangladeshbeta-LactamasesGenomicsHumansMicrobial Sensitivity TestsMultilocus Sequence TypingAnti-Bacterial AgentsBacterial Proteinsbeta-LactamasesAcinetobacter baumanniiAcinetobacter nosocomialisClonal complexComparative genomicsWGS

Identifiers

PMID36471260
PMCPMC9721023
OpenAlexW4311279648

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.