Evidence map›Paper›PMID 36468867›Full record

ArticleJournal of bacteriology2023

Landscape of Post-Transcriptional tRNA Modifications in Streptomyces albidoflavus J1074 as Portrayed by Mass Spectrometry and Genomic Data Mining.

Oksana Koshla, Lea-Marie Vogt, Oleksandr Rydkin, Yuliia Sehin, Iryna Ostash, Mark Helm, Bohdan Ostash

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 16 citations in OpenAlex.

  1. Compendium of RNA modifications for bacterial stress adaptation.Microbiology and molecular biology reviews : MMBR · 2026
    Review
  2. Article
  3. Article
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  5. Probing the function ofMicrobiology spectrum · 2026
    Article
  6. Article
  7. Review
  8. Article
  9. Review
  10. Biosynthesis and function of 7-deazaguanine derivatives in bacteria and phages.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  11. Mapping the tRNA modification landscape ofFrontiers in microbiology · 2024
    Article
  12. Article
  13. RNA biology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Oksana KoshlaDepartment of Genetics and Biotechnology, Ivan Franko National University of Lviv, Lviv, Ukraine.ORCID 0000-0002-2234-1071
Lea-Marie VogtInstitute of Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-Universität Mainz, Mainz, Germany.
Oleksandr RydkinDepartment of Genetics and Biotechnology, Ivan Franko National University of Lviv, Lviv, Ukraine.
Yuliia SehinDepartment of Genetics and Biotechnology, Ivan Franko National University of Lviv, Lviv, Ukraine.
Iryna OstashDepartment of Genetics and Biotechnology, Ivan Franko National University of Lviv, Lviv, Ukraine.
Mark HelmInstitute of Pharmaceutical and Biomedical Sciences, Johannes Gutenberg-Universität Mainz, Mainz, Germany.
Bohdan OstashDepartment of Genetics and Biotechnology, Ivan Franko National University of Lviv, Lviv, Ukraine.ORCID 0000-0001-5904-5957
Lviv University · UAJohannes Gutenberg University Mainz · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Actinobacterial genus Streptomyces (streptomycetes) represents one of the largest cultivable group of bacteria famous for their ability to produce valuable specialized (secondary) metabolites. Regulation of secondary metabolic pathways inextricably couples the latter to essential cellular processes that determine levels of amino acids, carbohydrates, phosphate, etc. Post-transcriptional tRNA modifications remain one of the least studied aspects of streptomycete physiology, albeit a few of them were recently shown to impact antibiotic production. In this study, we describe the diversity of post-transcriptional tRNA modifications in model strain Streptomyces albus (

Indexed as

StreptomycesAnti-Bacterial AgentsGenomicsMass SpectrometryRNA, TransferAnti-Bacterial AgentsRNA, TransferMiaBMiaEpost-transcriptional tRNA modificationsStreptomyces albidoflavus (albus) J1074tRNA

Identifiers

PMID36468867
PMCPMC9879100
OpenAlexW4310709612

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.