Evidence map›Paper›PMID 36468850›Full record

ArticlemSystems2022

Natural Variation in Diauxic Shift between Patagonian

Jennifer Molinet, Juan I Eizaguirre, Pablo Quintrel, Nicolás Bellora, Carlos A Villarroel, Pablo Villarreal, José Benavides-Parra, Roberto F Nespolo, Diego Libkind, Francisco A Cubillos

Open access · goldAbstract read
In one paragraph

Article in mSystems, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
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  5. Co-culture dynamics betweenCurrent research in food science · 2025
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Jennifer Molinet *ANID-Millennium Science Initiative-Millennium Institute for Integrative Biology (iBio), Santiago, Chile.
Juan I Eizaguirre *Instituto Andino Patagónico de Tecnologías Biológicas y Geoambientales (IPATEC), Universidad Nacional del Comahue, CONICET, CRUB, San Carlos de Bariloche, Río Negro, Argentina.
Pablo QuintrelANID-Millennium Science Initiative-Millennium Institute for Integrative Biology (iBio), Santiago, Chile.
Nicolás BelloraInstituto de Tecnologías Nucleares para la Salud (INTECNUS), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), San Carlos de Bariloche, Argentina.
Carlos A VillarroelANID-Millennium Science Initiative-Millennium Institute for Integrative Biology (iBio), Santiago, Chile.
Pablo VillarrealANID-Millennium Science Initiative-Millennium Institute for Integrative Biology (iBio), Santiago, Chile.
José Benavides-ParraDepartamento de Biología, Facultad de Química y Biología, Universidad de Santiago de Chile, Santiago, Chile.
Roberto F NespoloANID-Millennium Science Initiative-Millennium Institute for Integrative Biology (iBio), Santiago, Chile.
Diego LibkindInstituto Andino Patagónico de Tecnologías Biológicas y Geoambientales (IPATEC), Universidad Nacional del Comahue, CONICET, CRUB, San Carlos de Bariloche, Río Negro, Argentina.
Francisco A CubillosANID-Millennium Science Initiative-Millennium Institute for Integrative Biology (iBio), Santiago, Chile.ORCID 0000-0003-3022-469X
Universidad de Santiago de Chile · CLConsejo Nacional de Investigaciones Científicas y Técnicas · ARAustral University of Chile · CLUniversity of Talca · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The study of natural variation can untap novel alleles with immense value for biotechnological applications. Saccharomyces eubayanus Patagonian isolates exhibit differences in the diauxic shift between glucose and maltose, representing a suitable model to study their natural genetic variation for novel strains for brewing. However, little is known about the genetic variants and chromatin regulators responsible for these differences. Here, we show how genome-wide chromatin accessibility and gene expression differences underlie distinct diauxic shift profiles in S. eubayanus. We identified two strains with a rapid diauxic shift between glucose and maltose (CL467.1 and CBS12357) and one strain with a remarkably low fermentation efficiency and longer lag phase during diauxic shift (QC18). This is associated in the QC18 strain with lower transcriptional activity and chromatin accessibility of specific genes of maltose metabolism and higher expression levels of glucose transporters. These differences are governed by the HAP complex, which differentially regulates gene expression depending on the genetic background. We found in the QC18 strain a contrasting phenotype to those phenotypes described in S. cerevisiae, where

Indexed as

MaltoseSaccharomyces cerevisiaeBeerChromatinGlucoseSaccharomycesChromatinGlucoseMaltoseATAC-seqbeerdiauxic shiftHAPRNA-seqSaccharomyces eubayanuswildwild strainsyeasts

Identifiers

PMID36468850
PMCPMC9765239
OpenAlexW4310708280

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.