Evidence map›Paper›PMID 36468449›Full record

ArticleMedical and veterinary entomology2023

Low genetic diversity and population structuring of Amblyomma hebraeum and Rickettsia africae from coastal and inland regions in the Eastern Cape Province of South Africa.

Alicia Pillay, Nkululeko Nyangiwe, Samson Mukaratirwa

Open access · hybridAbstract read
In one paragraph

Article in Medical and veterinary entomology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 3 countries.

Alicia PillaySchool of Life Sciences, Biological Sciences, College of Agriculture, Engineering and Science, University of KwaZulu-Natal, Westville Campus, Durban, South Africa.ORCID 0000-0002-7872-4709
Nkululeko NyangiweDepartment of Rural Development and Agrarian Reform, Animal Science, Döhne Agricultural Development Institute, Stutterheim, South Africa.
Samson MukaratirwaSchool of Life Sciences, Biological Sciences, College of Agriculture, Engineering and Science, University of KwaZulu-Natal, Westville Campus, Durban, South Africa.
Ross University School of Veterinary Medicine · KNUniversity of KwaZulu-Natal · ZAUniversity of South Africa · ZA

Funding

Spatial eco-epidemiology of tick-borne rickettisal pathogens R01AI136035 · NIAID · OLD DOMINION UNIVERSITY · PI GAFF, HOLLY · 2017 to 2021
$2.4M
NIAID NIH HHS R01 AI136035
6 · The paper itself

Abstract

Amblyomma hebraeum is the main vector of Rickettsia africae, the causative agent of African tick bite fever in southern Africa. Because pathogen dispersal is known to be influenced by tick adaptations to climate or host species, this study aimed to analyse the genetic diversity of A. hebraeum and R. africae infection of ticks collected from cattle in the Eastern Cape province of South Africa. DNA was extracted, amplified, and sequenced for the COI and ITS2 markers from A. hebraeum samples and the 17 kDa and ompA genes for rickettsial detection. Between six and ten haplotypes were identified from 40 COI and 31 ITS2 sequences; however, no population structuring was observed among sites (ΦST = 0.22, p < 0.05). All A. hebraeum isolates clustered with southern Africa GenBank isolates. Rickettsia africae was detected in 46.92% (95% CI = 41%-53%, n = 260) of ticks. All R. africae isolates clustered with strain PELE and Chucks, which were reported previously from South Africa. These results confirm that A. hebraeum populations are undergoing a recent population expansion driven by cattle movement, facilitating local and long dispersal events across the Eastern Cape province.

Indexed as

RickettsiaTicksAmblyommaAnimalsCattleGenetic VariationSouth AfricaAmblyomma hebraeummitochondrial markernuclear markerpopulation geneticsrickettsia africaeSouth Africatick-borne disease

Identifiers

PMID36468449
PMCPMC10191886
OpenAlexW4310707313

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.