Evidence map›Paper›PMID 36465979›Full record

ArticleComputer methods in biomechanics and biomedical engineering. Imaging & visualization2022

A Feature-based Affine Registration Method for Capturing Background Lung Tissue Deformation for Ground Glass Nodule Tracking.

Yehuda K Ben-Zikri, María Helguera, David Fetzer, David A Shrier, Stephen R Aylward, Deepak Chittajallu, Marc Niethammer, Nathan D Cahill, Cristian A Linte

Open access · greenAbstract read
In one paragraph

Article in Computer methods in biomechanics and biomedical engineering. Imaging & visualization, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Yehuda K Ben-ZikriCenter for Imaging Science, Rochester Institute of Technology, Rochester, NY, USA.
María HelgueraCenter for Imaging Science, Rochester Institute of Technology, Rochester, NY, USA.
David FetzerDept. of Radiology, UT Southwestern Medical Center, Dallas, TX, USA.
David A ShrierDept. of Radiology, University of Rochester Medical Center, Rochester, NY, USA.
Stephen R AylwardMedical Computing, Kitware, Inc., Carrboro, NC, USA.
Deepak ChittajalluMedical Computing, Kitware, Inc., Carrboro, NC, USA.
Marc NiethammerDept. of Computer Science, University of North Carolina, Chapel Hill, NC, USA.
Nathan D CahillSchool of Mathematical Sciences, Rochester Institute of Technology, Rochester, NY, USA.
Cristian A LinteCenter for Imaging Science, Rochester Institute of Technology, Rochester, NY, USA.
Rochester Institute of Technology · USKitware (United States) · USSouthwestern Medical Center · USUniversity of North Carolina at Chapel Hill · USUniversity of Rochester Medical Center · US

Funding

Biomedical Computing and Visualization Tools for Computer-integrated Diagnostic and Therapeutic Data ScienceR35GM128877 · NIGMS · ROCHESTER INSTITUTE OF TECHNOLOGY · PI Cristian A Linte · 2018 to 2026
$2.9M
Image-Based Quantification and Analysis of Longitudinal Lung Nodule DeformationsR41EB015775 · NIBIB · KITWARE, INC. · PI CAHILL, NATHAN D., NIETHAMMER, MARC · 2013 to 2014
$398k
NIBIB NIH HHS R41 EB015775NIGMS NIH HHS R35 GM128877
6 · The paper itself

Abstract

Lung nodule tracking assessment relies on cross-sectional measurements of the largest lesion profile depicted in initial and follow-up computed tomography (CT) images. However, apparent changes in nodule size assessed via simple image-based measurements may also be compromised by the effect of the background lung tissue deformation on the GGN between the initial and follow-up images, leading to erroneous conclusions about nodule changes due to disease. To compensate for the lung deformation and enable consistent nodule tracking, here we propose a feature-based affine registration method and study its performance vis-a-vis several other registration methods. We implement and test each registration method using both a lung- and a lesion-centered region of interest on ten patient CT datasets featuring twelve nodules, including both benign and malignant GGO lesions containing pure GGNs, part-solid, or solid nodules. We evaluate each registration method according to the target registration error (TRE) computed across 30 - 50 homologous fiducial landmarks surrounding the lesions and selected by expert radiologists in both the initial and follow-up patient CT images. Our results show that the proposed feature-based affine lesion-centered registration yielded a 1.1 ± 1.2 mm TRE, while a Symmetric Normalization deformable registration yielded a 1.2 ± 1.2 mm TRE, and a least-square fit registration of the 30-50 validation fiducial landmark set yielded a 1.5 ± 1.2 mm TRE. Although the deformable registration yielded a slightly higher registration accuracy than the feature-based affine registration, it is significantly more computationally efficient, eliminates the need for ambiguous segmentation of GGNs featuring ill-defined borders, and reduces the susceptibility of artificial deformations introduced by the deformable registration, which may lead to increased similarity between the registered initial and follow-up images, over-compensating for the background lung tissue deformation, and, in turn, compromising the true disease-induced nodule change assessment. We also assessed the registration qualitatively, by visual inspection of the subtraction images, and conducted a pilot pre-clinical study that showed the proposed feature-based lesion-centered affine registration effectively compensates for the background lung tissue deformation between the initial and follow-up images and also serves as a reliable baseline registration method prior to assessing lung nodule changes due to disease.

Indexed as

background lung tissue deformationintensity- and feature-based affine registrationlung CT imagingnon-rigid registrationpulmonary nodule trackingtarget registration error

Identifiers

PMID36465979
PMCPMC9718421
OpenAlexW3212944296

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.