Evidence map›Paper›PMID 36465116›Full record

ArticleiScience2022

Chromatin reconstruction during mouse terminal erythropoiesis.

Honghao Bi, Ye Hou, Juan Wang, Zongjun Xia, Dongmei Wang, Yijie Liu, Haiyan Bao, Xu Han, Kehan Ren, Ermin Li and 2 more

Open access · goldAbstract read
In one paragraph

Article in iScience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 2 countries.

Honghao BiDepartment of Pathology, Feinberg School of Medicine, Northwestern University, 303 East Chicago Avenue, Ward 3-230, Chicago, IL60611, USA.
Ye HouRobert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, IL, USA.
Juan WangRobert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, IL, USA.
Zongjun XiaDepartment of Pathology, Feinberg School of Medicine, Northwestern University, 303 East Chicago Avenue, Ward 3-230, Chicago, IL60611, USA.
Dongmei WangDepartment of Pathology, Feinberg School of Medicine, Northwestern University, 303 East Chicago Avenue, Ward 3-230, Chicago, IL60611, USA.
Yijie LiuDepartment of Pathology, Feinberg School of Medicine, Northwestern University, 303 East Chicago Avenue, Ward 3-230, Chicago, IL60611, USA.
Haiyan BaoDepartment of Pathology, Feinberg School of Medicine, Northwestern University, 303 East Chicago Avenue, Ward 3-230, Chicago, IL60611, USA.
Xu HanDepartment of Pathology, Feinberg School of Medicine, Northwestern University, 303 East Chicago Avenue, Ward 3-230, Chicago, IL60611, USA.
Kehan RenDepartment of Pathology, Feinberg School of Medicine, Northwestern University, 303 East Chicago Avenue, Ward 3-230, Chicago, IL60611, USA.
Ermin LiDepartment of Pathology, Feinberg School of Medicine, Northwestern University, 303 East Chicago Avenue, Ward 3-230, Chicago, IL60611, USA.
Feng YueRobert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, IL, USA.
Peng JiDepartment of Pathology, Feinberg School of Medicine, Northwestern University, 303 East Chicago Avenue, Ward 3-230, Chicago, IL60611, USA.
Northwestern University · US

Funding

The roles of mDia2 in hematopoietic stem and progenitor cell engraftment and migrationR01HL148012 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI JI, PENG · 2020 to 2023
$2.1M
The roles of mDia2 in membrane remodeling and organelle clearance during reticulocyte formationR01DK124220 · NIDDK · NORTHWESTERN UNIVERSITY AT CHICAGO · PI JI, PENG · 2020 to 2024
$2.0M
The role of Pleckstrin-2 as a functional node in myeloid proliferationR01HL150729 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI JI, PENG · 2020 to 2023
$2.0M
NHLBI NIH HHS R01 HL148012NHLBI NIH HHS R01 HL150729NIDDK NIH HHS R01 DK124220
6 · The paper itself

Abstract

Mammalian terminal erythropoiesis involves chromatin and nuclear condensation followed by enucleation. Late-stage erythroblasts undergo caspase-mediated nuclear opening that is important for nuclear condensation through partial histone release. It remains unknown the dynamic changes of three-dimensional (3D) genomic organization during terminal erythropoiesis. Here, we used Hi-C to determine the chromatin structural change during primary mouse erythroblast terminal differentiation. We also performed RNA-sequencing and ATAC-sequencing under the same experimental setting to further reveal the genome accessibility and gene expression changes during this process. We found that late-stage terminal erythropoiesis involves global loss of topologically associating domains and establishment of inter-chromosomal interactions of the heterochromatin regions, which are associated with globally increased chromatin accessibility and upregulation of erythroid-related genes.

Indexed as

Cell biologyStructural biology

Identifiers

PMID36465116
PMCPMC9709226
OpenAlexW4308926056

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.