Evidence map›Paper›PMID 36462503›Full record

ArticleImmunity2022

Functional proteomic profiling links deficient DNA clearance with increased mortality in individuals with severe COVID-19 pneumonia.

Iker Valle Aramburu, Dennis Hoving, Spyros I Vernardis, Martha C F Tin, Marianna Ioannou, Mia I Temkin, Nathalia M De Vasconcelos, Vadim Demichev, Elisa Theresa Helbig, Lena Lippert and 12 more

Open access · hybridAbstract read
In one paragraph

Article in Immunity, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 34 citations in OpenAlex.

  1. Exercise intensity and training alter the innate immune cell type and chromosomal origins of circulating cell-free DNA in humans.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  7. Unraveling NETs in Sepsis: From Cellular Mechanisms to Clinical Relevance.International journal of molecular sciences · 2025
    Review
  8. Kinetics of DNases after hematopoietic stem cell transplant.Blood vessels, thrombosis & hemostasis · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 7 institutions in 3 countries.

Iker Valle AramburuThe Francis Crick Institute, Antimicrobial Defence Laboratory, London, UK.
Dennis HovingThe Francis Crick Institute, Antimicrobial Defence Laboratory, London, UK.
Spyros I VernardisThe Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London, UK.
Martha C F TinThe Francis Crick Institute, Antimicrobial Defence Laboratory, London, UK.
Marianna IoannouThe Francis Crick Institute, Antimicrobial Defence Laboratory, London, UK.
Mia I TemkinThe Francis Crick Institute, Antimicrobial Defence Laboratory, London, UK.
Nathalia M De VasconcelosThe Francis Crick Institute, Antimicrobial Defence Laboratory, London, UK.
Vadim DemichevThe Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London, UK.
Elisa Theresa HelbigCharité - Universitätsmedizin Berlin, Department of Infectious Diseases and Respiratory Medicine, Berlin, Germany.
Lena LippertCharité - Universitätsmedizin Berlin, Department of Infectious Diseases and Respiratory Medicine, Berlin, Germany.
Klaus StahlDepartment of Gastroenterology, Hepatology and Endocrinology, Medical School Hannover, Hannover, Germany.
Matthew WhiteThe Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London, UK.
Helena RadbruchCharité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Institute of Neuropathology, Charitéplatz 1, 10117 Berlin, Germany.
Jana IhlowCharité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Institute of Pathology, Charitéplatz 1, 10117 Berlin, Germany.
David HorstCharité - Universitätsmedizin Berlin, corporate member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Institute of Pathology, Charitéplatz 1, 10117 Berlin, Germany.
Scott T ChiesaInstitute of Cardiovascular Science, University College London, London, UK.
John E DeanfieldInstitute of Cardiovascular Science, University College London, London, UK.
Sascha DavidInstitute for Intensive Care Medicine, University Hospital Zurich, Zurich, Switzerland.
Christian BodeDepartment of Anaesthesiology and Critical Care, University Hospital Bonn, Bonn, Germany.
Florian KurthCharité - Universitätsmedizin Berlin, Department of Infectious Diseases and Respiratory Medicine, Berlin, Germany.
Markus RalserThe Francis Crick Institute, Molecular Biology of Metabolism Laboratory, London, UK; Charité - Universitätsmedizin Berlin, Department of Biochemistry, 10117 Berlin, Germany.
Venizelos PapayannopoulosThe Francis Crick Institute, Antimicrobial Defence Laboratory, London, UK. Electronic address: veni.p@crick.ac.uk.
The Francis Crick Institute · GBCharité - Universitätsmedizin Berlin · DEHumboldt-Universität zu Berlin · DEUniversity College London · GBMedizinische Hochschule Hannover · DEUniversity Hospital Bonn · DEUniversity Hospital of Zurich · CH

Funding

British Heart Foundation PG/18/45/33814Cancer Research UK FC0010129Cancer Research UK FC001134Medical Research Council FC0010129Medical Research Council FC001134Medical Research Council G9815508Medical Research Council MC_PC_15018Medical Research Council MC_PC_19009Wellcome Trust 222825/Z/21/ZWellcome Trust FC0010129Wellcome Trust FC001134
6 · The paper itself

Abstract

The factors that influence survival during severe infection are unclear. Extracellular chromatin drives pathology, but the mechanisms enabling its accumulation remain elusive. Here, we show that in murine sepsis models, splenocyte death interferes with chromatin clearance through the release of the DNase I inhibitor actin. Actin-mediated inhibition was compensated by upregulation of DNase I or the actin scavenger gelsolin. Splenocyte death and neutrophil extracellular trap (NET) clearance deficiencies were prevalent in individuals with severe COVID-19 pneumonia or microbial sepsis. Activity tracing by plasma proteomic profiling uncovered an association between low NET clearance and increased COVID-19 pathology and mortality. Low NET clearance activity with comparable proteome associations was prevalent in healthy donors with low-grade inflammation, implicating defective chromatin clearance in the development of cardiovascular disease and linking COVID-19 susceptibility to pre-existing conditions. Hence, the combination of aberrant chromatin release with defects in protective clearance mechanisms lead to poor survival outcomes.

Indexed as

COVID-19SepsisActinsAnimalsChromatinDeoxyribonuclease IDNAMiceNeutrophilsProteomicsActinsChromatinDeoxyribonuclease IDNAactinCOVID-19degradationDNADNase IhistoneinflammationNETsproteomicssepsis

Identifiers

PMID36462503
PMCPMC9671605
OpenAlexW4309631804

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.