Evidence map›Paper›PMID 36461090›Full record

ArticleBiology of sex differences2022

Dynamic transcriptome analysis reveals the gene network of gonadal development from the early history life stages in dwarf surfclam Mulinia lateralis.

Yajuan Li, Liangjie Liu, Lijing Zhang, Huilan Wei, Shaoxuan Wu, Tian Liu, Ya Shu, Yaxin Yang, Zujing Yang, Shi Wang and 2 more

Open access · goldAbstract read
In one paragraph

Article in Biology of sex differences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 14 citations in OpenAlex.

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  11. Signatures of selection inEvolutionary applications · 2024
    Article
  12. Frontiers in cell and developmental biology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Yajuan LiMOE Key Laboratory of Marine Genetics and Breeding & Sars-Fang Centre, Ocean University of China, 5 Yushan Road, Qingdao, China.
Liangjie LiuMOE Key Laboratory of Marine Genetics and Breeding & Sars-Fang Centre, Ocean University of China, 5 Yushan Road, Qingdao, China.
Lijing ZhangMOE Key Laboratory of Marine Genetics and Breeding & Sars-Fang Centre, Ocean University of China, 5 Yushan Road, Qingdao, China.
Huilan WeiMOE Key Laboratory of Marine Genetics and Breeding & Sars-Fang Centre, Ocean University of China, 5 Yushan Road, Qingdao, China.
Shaoxuan WuMOE Key Laboratory of Marine Genetics and Breeding & Sars-Fang Centre, Ocean University of China, 5 Yushan Road, Qingdao, China.
Tian LiuMOE Key Laboratory of Marine Genetics and Breeding & Sars-Fang Centre, Ocean University of China, 5 Yushan Road, Qingdao, China.
Ya ShuMOE Key Laboratory of Marine Genetics and Breeding & Sars-Fang Centre, Ocean University of China, 5 Yushan Road, Qingdao, China.
Yaxin YangMOE Key Laboratory of Marine Genetics and Breeding & Sars-Fang Centre, Ocean University of China, 5 Yushan Road, Qingdao, China.
Zujing YangMOE Key Laboratory of Marine Genetics and Breeding & Sars-Fang Centre, Ocean University of China, 5 Yushan Road, Qingdao, China.
Shi WangMOE Key Laboratory of Marine Genetics and Breeding & Sars-Fang Centre, Ocean University of China, 5 Yushan Road, Qingdao, China.
Zhenmin BaoMOE Key Laboratory of Marine Genetics and Breeding & Sars-Fang Centre, Ocean University of China, 5 Yushan Road, Qingdao, China.
Lingling ZhangMOE Key Laboratory of Marine Genetics and Breeding & Sars-Fang Centre, Ocean University of China, 5 Yushan Road, Qingdao, China. lingling80@ouc.edu.cn.ORCID 0000-0002-9161-4387
Ocean University of China · CNQingdao National Laboratory for Marine Science and Technology · CN

Funding

Key R&D Project of Shandong Province 2021ZLGX03National Natural Science Foundation of China 32130107National Natural Science Foundation of China 32172967
6 · The paper itself

Abstract

backgroundGonadal development is driven by a complex genetic cascade in vertebrates. However, related information remains limited in molluscs owing to the long generation time and the difficulty in maintaining whole life cycle in the lab. The dwarf surfclam Mulinia lateralis is considered an ideal bivalve model due to the short generation time and ease to breed in the lab.

resultsTo gain a comprehensive understanding of gonadal development in M. lateralis, we conducted a combined morphological and molecular analysis on the gonads of 30 to 60 dpf. Morphological analysis showed that gonad formation and sex differentiation occur at 35 and 40-45 dpf, respectively; then the gonads go through gametogenic cycle. Gene co-expression network analysis on 40 transcriptomes of 35-60 dpf gonads identifies seven gonadal development-related modules, including two gonad-forming modules (M6, M7), three sex-specific modules (M14, M12, M11), and two sexually shared modules (M15, M13). The modules participate in different biological processes, such as cell communication, glycan biosynthesis, cell cycle, and ribosome biogenesis. Several hub transcription factors including SOX2, FOXZ, HSFY, FOXL2 and HES1 are identified. The expression of top hub genes from sex-specific modules suggests molecular sex differentiation (35 dpf) occurs earlier than morphological sex differentiation (40-45 dpf).

conclusionThis study provides a deep insight into the molecular basis of gonad formation, sex differentiation and gametogenesis in M. lateralis, which will contribute to a comprehensive understanding of the reproductive regulation network in molluscs.

Indexed as

BivalviaGene Regulatory NetworksAnimalsFemaleGene Expression ProfilingGonadsMaleTranscriptomeGametogenesisGene networkGonadal developmentGonad formationMulinia lateralisSex differentiation

Identifiers

PMID36461090
PMCPMC9716669
OpenAlexW4311106894

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.