Evidence map›Paper›PMID 36460642›Full record

ArticleNature communications2022

An NKX-COUP-TFII morphogenetic code directs mucosal endothelial addressin expression.

Thanh Theresa Dinh, Menglan Xiang, Anusha Rajaraman, Yongzhi Wang, Nicole Salazar, Yu Zhu, Walter Roper, Siyeon Rhee, Kevin Brulois, Ed O'Hara and 12 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. MCardiovascular diagnosis and therapy · 2024
    Article
  5. Mechanisms and functions of intestinal vascular specialization.The Journal of experimental medicine · 2024
    Review
  6. Quantitative Analysis of NKX2-3 Expression in Human Colon: An Immunohistochemical Study.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2024
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 8 institutions in 4 countries.

Thanh Theresa Dinh *Laboratory of Immunology and Vascular Biology, Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Menglan Xiang *Laboratory of Immunology and Vascular Biology, Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.ORCID 0000-0003-4234-4998
Anusha Rajaraman *Laboratory of Immunology and Vascular Biology, Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Yongzhi WangLaboratory of Immunology and Vascular Biology, Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Nicole SalazarLaboratory of Immunology and Vascular Biology, Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Yu ZhuLaboratory of Immunology and Vascular Biology, Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Walter RoperColumbia University Vagelos College of Physicians and Surgeons, New York City, NY, USA.
Siyeon RheeDepartment of Biology, Stanford University, Stanford, CA, USA.ORCID 0000-0002-7642-4016
Kevin BruloisLaboratory of Immunology and Vascular Biology, Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Ed O'HaraPalo Alto Veterans Institute for Research, Palo Alto, CA, USA.
Helena KiefelLaboratory of Immunology and Vascular Biology, Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Truc M DinhPalo Alto Veterans Institute for Research, Palo Alto, CA, USA.
Yuhan BiLaboratory of Immunology and Vascular Biology, Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Dalila GonzalezUniversity of California, San Diego, La Jolla, CA, USA.
Evan P BaoPalo Alto Veterans Institute for Research, Palo Alto, CA, USA.
Kristy Red-HorseDepartment of Biology, Stanford University, Stanford, CA, USA.ORCID 0000-0003-1541-601X
Peter BaloghDepartment of Immunology and Biotechnology, University of Pécs Medical School, Pécs, Hungary.
Fanni GábrisDepartment of Immunology and Biotechnology, University of Pécs Medical School, Pécs, Hungary.ORCID 0000-0002-6036-3941
Balázs GasznerDepartment of Anatomy, University of Pécs Medical School, Pécs, Hungary.ORCID 0000-0003-2830-2732
Gergely BertaDepartment of Medical Biology and Central Electron Microscopy Laboratory, University of Pécs Medical School, Pécs, Hungary.
Junliang PanPalo Alto Veterans Institute for Research, Palo Alto, CA, USA. jpan@stanford.edu.ORCID 0000-0002-2373-0917
Eugene C ButcherLaboratory of Immunology and Vascular Biology, Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA. ebutcher@stanford.edu.ORCID 0000-0001-8786-7907
Palo Alto Veterans Institute for Research · USStanford University · USUniversity of Pecs · HUVA Palo Alto Health Care System · USColumbia University · USHoward Hughes Medical Institute · USLund University · SEUniversity of California San Diego · US

Funding

MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
T32 Training Program in Mechanisms and Innovation in Vascular DiseaseT32HL098049 · NHLBI · STANFORD UNIVERSITY · PI Nicholas James Leeper, Philip S Tsao · 2010 to 2026
$6.3M
Mechanotransduction and transcriptional regulation during artery developmentR01HL128503 · NHLBI · STANFORD UNIVERSITY · PI Mary Red-Horse · 2015 to 2026
$5.8M
Progenitor Cells for High Endothelium in the Immune ResponseR01AI130471 · NIAID · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI EUGENE C BUTCHER · 2017 to 2026
$5.0M
Intestinal Lymphocyte TraffickingR01AI047822 · NIAID · STANFORD UNIVERSITY · PI EUGENE C BUTCHER · 2001 to 2026
$4.7M
Tumor and Immune Programming of Tumor-AssociatedEndotheliumR01CA228019 · NCI · PALO ALTO VETERANS INSTIT FOR RESEARCH · PI BUTCHER, EUGENE C · 2019 to 2023
$2.2M
Blocking an Endogenous Inhibitor of Anti-tumor Leukocyte RecruitmentF32CA200103 · NCI · STANFORD UNIVERSITY · PI BRULOIS, KEVIN · 2015 to 2017
$137k
BLRD VA I01 BX002919NCI NIH HHS F32 CA200103NCI NIH HHS R01 CA228019NHLBI NIH HHS R01 HL128503NHLBI NIH HHS T32 HL098049NIAID NIH HHS R01 AI047822NIAID NIH HHS R01 AI130471NIAID NIH HHS T32 AI007290
6 · The paper itself

Abstract

Immunoglobulin family and carbohydrate vascular addressins encoded by Madcam1 and St6gal1 control lymphocyte homing into intestinal tissues, regulating immunity and inflammation. The addressins are developmentally programmed to decorate endothelial cells lining gut post-capillary and high endothelial venules (HEV), providing a prototypical example of organ- and segment-specific endothelial specialization. We identify conserved NKX-COUP-TFII composite elements (NCCE) in regulatory regions of Madcam1 and St6gal1 that bind intestinal homeodomain protein NKX2-3 cooperatively with venous nuclear receptor COUP-TFII to activate transcription. The Madcam1 element also integrates repressive signals from arterial/capillary Notch effectors. Pan-endothelial COUP-TFII overexpression induces ectopic addressin expression in NKX2-3

Indexed as

Endothelial CellsVeinsArteriesCell MovementMorphogenesis

Identifiers

PMID36460642
PMCPMC9718832
OpenAlexW4310579050

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.