Evidence map›Paper›PMID 36459117›Full record

ArticleThe Journal of cell biology2023

Signal sequences encode information for protein folding in the endoplasmic reticulum.

Sha Sun, Xia Li, Malaiyalam Mariappan

Open access · greenAbstract read
In one paragraph

Article in The Journal of cell biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
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  12. Pathogenic signal peptide variants in the human genome.NAR genomics and bioinformatics · 2023
    Article
  13. Review
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  16. Article
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  18. Clearing Traffic Jams During Protein Translocation Across Membranes.Frontiers in cell and developmental biology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sha SunDepartment of Cell Biology, Nanobiology Institute, Yale School of Medicine, Yale West Campus, West Haven, CT.ORCID 0000-0001-7272-1331
Xia LiDepartment of Cell Biology, Nanobiology Institute, Yale School of Medicine, Yale West Campus, West Haven, CT.ORCID 0000-0001-5478-8970
Malaiyalam MariappanDepartment of Cell Biology, Nanobiology Institute, Yale School of Medicine, Yale West Campus, West Haven, CT.ORCID 0000-0002-2966-1182
Yale University · US

Funding

The mechanism of Ire1-mediated mRNA cleavage during endoplasmic reticulum stressR01GM117386 · NIGMS · YALE UNIVERSITY · PI MARIAPPAN, MALAIYALAM · 2016 to 2024
$3.0M
NIGMS NIH HHS R01 GM117386NIH HHS R01GM117386
6 · The paper itself

Abstract

One-third of newly synthesized proteins in mammals are translocated into the endoplasmic reticulum (ER) through the Sec61 translocon. How protein translocation coordinates with chaperone availability in the ER to promote protein folding remains unclear. We find that marginally hydrophobic signal sequences and transmembrane domains cause transient retention at the Sec61 translocon and require the luminal BiP chaperone for efficient protein translocation. Using a substrate-trapping proteomic approach, we identify that nascent proteins bearing marginally hydrophobic signal sequences accumulate on the cytosolic side of the Sec61 translocon. Sec63 is co-translationally recruited to the translocation site and mediates BiP binding to incoming polypeptides. BiP binding not only releases translocationally paused nascent chains but also ensures protein folding in the ER. Increasing hydrophobicity of signal sequences bypasses Sec63/BiP-dependent translocation, but translocated proteins are prone to misfold and aggregate in the ER under limited BiP availability. Thus, the signal sequence-guided protein folding may explain why signal sequences are diverse and use multiple protein translocation pathways.

Indexed as

Endoplasmic Reticulum Chaperone BiPMolecular ChaperonesProtein FoldingProtein Sorting SignalsSEC Translocation ChannelsAnimalsEndoplasmic ReticulumMammalsProteomicsEndoplasmic Reticulum Chaperone BiPMolecular ChaperonesProtein Sorting SignalsSEC Translocation Channels

Identifiers

PMID36459117
PMCPMC9723807
OpenAlexW4310955497

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.