ArticleMolecular biology and evolution2022
Easy353: A Tool to Get Angiosperms353 Genes for Phylogenomic Research.
Article in Molecular biology and evolution, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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19 citing papers in PubMed.
- Recombination and Incomplete Lineage Sorting Resolve the Enigma of Lysozyme Evolution.Journal of molecular evolution · 2026Article
- Applying Target Capture Sequencing to Unravel thePlants (Basel, Switzerland) · 2026Article
- Phylogenomics unravels the early divergence and diversification in Bignoniaceae.Plant diversity · 2026Article
- GeneMiner2: Accurate and Automated Recovery of Genes From Genome Skimming Data.Molecular ecology resources · 2026Article
- Effects of mountain uplift and climate change on phylogeography and species divergence of East Asia Morella.Journal of plant research · 2026Article
- Climatic niche divergence and long-distance dispersal contributed to the pantropical intercontinental disjunctions of a liana lineage (Plant diversity · 2025Article
- Specimen Identification Through Multilocus Species Tree Constructed From Single-Copy Orthologs (SCOs): A Case Study inEcology and evolution · 2025Article
- Backbone phylogeny ofPlant diversity · 2025Article
- Comparative and phylogenetic analysis of Potentilla and Dasiphora (Rosaceae) based on plastid genome.BMC plant biology · 2025Article
- Both morphological and molecular data are crucial for describing new species - a case study on the genusFrontiers in plant science · 2025Article
- Shifts in reproductive strategies in the evolutionary trajectory of plant lineages.Science China. Life sciences · 2024Article
- Artifactual Orthologs and the Need for Diligent Data Exploration in Complex Phylogenomic Datasets: A Museomic Case Study from the Andean Flora.Systematic biology · 2024Article
- A new infrageneric classification ofPlant diversity · 2024Article
- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2024Article
- Chloroplast Genomes and Phylogenetic Analysis of ThreeInternational journal of molecular sciences · 2023Article
- Structural divergence and phylogenetic relationships of Ajania (Asteraceae) from plastomes and ETS.BMC genomics · 2023Article
- Plastid Genome Assembly Using Long-read data.Molecular ecology resources · 2023Article
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6 authors.
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Abstract
The Angiosperms353 gene set (AGS) consists of a set of 353 universal low-copy nuclear genes that were selected by examining more than 600 angiosperm species. These genes can be used for phylogenetic studies and population genetics at multiple taxonomic scales. However, current pipelines are not able to recover Angiosperms353 genes efficiently and accurately from high-throughput sequences. Here, we developed Easy353, a reference-guided assembly tool to recover the AGS from high-throughput sequencing (HTS) data (including genome skimming, RNA-seq, and target enrichment). Easy353 is an open-source user-friendly assembler for diverse types of high-throughput data. It has a graphical user interface and a command-line interface that is compatible with all widely-used computer systems. Evaluations, based on both simulated and empirical data, suggest that Easy353 yields low rates of assembly errors.
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