Evidence map›Paper›PMID 36456543›Full record

ArticleNature communications2022

Electron cryo-microscopy reveals the structure of the archaeal thread filament.

Matthew C Gaines, Michail N Isupov, Shamphavi Sivabalasarma, Risat Ul Haque, Mathew McLaren, Clara L Mollat, Patrick Tripp, Alexander Neuhaus, Vicki A M Gold, Sonja-Verena Albers and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

  1. Journal of bacteriology · 2026
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  6. Tat-dependent bundling pilus of a halophilic archaeon assembles by a strand donation mechanism and facilitates biofilm formation.Proceedings of the National Academy of Sciences of the United States of America · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Matthew C GainesLiving Systems Institute, University of Exeter, Stocker Road, EX4 4QD, Exeter, UK.
Michail N IsupovHenry Wellcome Building for Biocatalysis, Department of Biosciences, Faculty of Health and Life Sciences, University of Exeter, EX4 4QD, Exeter, UK.
Shamphavi SivabalasarmaInstitute of Biology II, Molecular Biology of Archaea, University of Freiburg, Schänzlestraße 1, 79104, Freiburg, Germany.
Risat Ul HaqueLiving Systems Institute, University of Exeter, Stocker Road, EX4 4QD, Exeter, UK.
Mathew McLarenLiving Systems Institute, University of Exeter, Stocker Road, EX4 4QD, Exeter, UK.
Clara L MollatInstitute of Biology II, Molecular Biology of Archaea, University of Freiburg, Schänzlestraße 1, 79104, Freiburg, Germany.
Patrick TrippInstitute of Biology II, Molecular Biology of Archaea, University of Freiburg, Schänzlestraße 1, 79104, Freiburg, Germany.
Alexander NeuhausLiving Systems Institute, University of Exeter, Stocker Road, EX4 4QD, Exeter, UK.
Vicki A M GoldLiving Systems Institute, University of Exeter, Stocker Road, EX4 4QD, Exeter, UK.ORCID 0000-0002-6908-0745
Sonja-Verena AlbersInstitute of Biology II, Molecular Biology of Archaea, University of Freiburg, Schänzlestraße 1, 79104, Freiburg, Germany.ORCID 0000-0003-2459-2226
Bertram DaumLiving Systems Institute, University of Exeter, Stocker Road, EX4 4QD, Exeter, UK. b.daum2@exeter.ac.uk.ORCID 0000-0002-3767-264X
University of Exeter · GBUniversity of Freiburg · DE

Funding

Wellcome Trust
6 · The paper itself

Abstract

Pili are filamentous surface extensions that play roles in bacterial and archaeal cellular processes such as adhesion, biofilm formation, motility, cell-cell communication, DNA uptake and horizontal gene transfer. The model archaeaon Sulfolobus acidocaldarius assembles three filaments of the type-IV pilus superfamily (archaella, archaeal adhesion pili and UV-inducible pili), as well as a so-far uncharacterised fourth filament, named "thread". Here, we report on the cryo-EM structure of the archaeal thread. The filament is highly glycosylated and consists of subunits of the protein Saci_0406, arranged in a head-to-tail manner. Saci_0406 displays structural similarity, but low sequence homology, to bacterial type-I pilins. Thread subunits are interconnected via donor strand complementation, a feature reminiscent of bacterial chaperone-usher pili. However, despite these similarities in overall architecture, archaeal threads appear to have evolved independently and are likely assembled by a distinct mechanism.

Indexed as

ArchaeaElectronsCryoelectron MicroscopyCytoskeletonSoftware

Identifiers

PMID36456543
PMCPMC9715654
OpenAlexW4310496994

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.