Evidence map›Paper›PMID 36454752›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Chemical genetic screening identifies nalacin as an inhibitor of GH3 amido synthetase for auxin conjugation.

Yinpeng Xie, Ying Zhu, Na Wang, Min Luo, Tsuyoshi Ota, Ruipan Guo, Ikuo Takahashi, Zongjun Yu, Yalikunjiang Aizezi, Linlin Zhang and 11 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
5.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 3 countries.

Yinpeng XieInstitute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China.ORCID 0000-0002-4897-9612
Ying ZhuInstitute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China.
Na WangInstitute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China.
Min LuoInstitute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China.ORCID 0000-0003-3170-6260
Tsuyoshi OtaGraduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 1138657, Japan.
Ruipan GuoSection of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0002-5999-8069
Ikuo TakahashiGraduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 1138657, Japan.
Zongjun YuInstitute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China.ORCID 0000-0002-2571-956X
Yalikunjiang AizeziInstitute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China.ORCID 0000-0002-6737-001X
Linlin ZhangInstitute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China.ORCID 0000-0001-6708-4948
Yan YanInstitute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China.
Yujie ZhangGraduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 1138657, Japan.
Hongyu BaoInstitute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China.ORCID 0000-0002-6563-1626
Yichuan WangInstitute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China.ORCID 0000-0003-2554-6686
Ziqiang ZhuJiangsu Key Laboratory for Biodiversity and Biotechnology, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China.ORCID 0000-0001-6401-2527
Ancheng C HuangInstitute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China.ORCID 0000-0003-0355-4271
Yunde ZhaoSection of Cell and Developmental Biology, University of California San Diego, La Jolla, CA 92093.ORCID 0000-0002-7224-8449
Tadao AsamiGraduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 1138657, Japan.ORCID 0000-0003-0774-6203
Hongda HuangInstitute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China.ORCID 0000-0002-5376-4747
Hongwei GuoInstitute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China.
Kai JiangInstitute of Plant and Food Science, Department of Biology, School of Life Sciences, Southern University of Science and Technology, Shenzhen, Guangdong 518055, China.ORCID 0000-0001-9901-5293
Southern University of Science and Technology · CNThe University of Tokyo · JPUniversity of California San Diego · USNanjing Normal University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Auxin inactivation is critical for plant growth and development. To develop plant growth regulators functioning in auxin inactivation pathway, we performed a phenotype-based chemical screen in Arabidopsis and identified a chemical, nalacin, that partially mimicked the effects of auxin. Genetic, pharmacological, and biochemical approaches demonstrated that nalacin exerts its auxin-like activities by inhibiting indole-3-acetic acid (IAA) conjugation that is mediated by Gretchen Hagen 3 (GH3) acyl acid amido synthetases. The crystal structure of Arabidopsis GH3.6 in complex with D4 (a derivative of nalacin) together with docking simulation analysis revealed the molecular basis of the inhibition of group II GH3 by nalacin. Sequence alignment analysis indicated broad bioactivities of nalacin and D4 as inhibitors of GH3s in vascular plants, which were confirmed, at least, in tomato and rice. In summary, our work identifies nalacin as a potent inhibitor of IAA conjugation mediated by group II GH3 that plays versatile roles in hormone-regulated plant development and has potential applications in both basic research and agriculture.

Indexed as

ArabidopsisLigasesChemical PhenomenaGenetic TestingIndoleacetic AcidsPlant Growth RegulatorsIndoleacetic AcidsLigasesPlant Growth Regulatorsauxin conjugationchemical geneticsGretchen Hagen 3plant growth regulatorroot development

Identifiers

PMID36454752
PMCPMC9894192
OpenAlexW4310493719

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.