Evidence map›Paper›PMID 36454094›Full record

ArticleG3 (Bethesda, Md.)2023

The Gossypium herbaceum L. Wagad genome as a resource for understanding cotton domestication.

Thiruvarangan Ramaraj, Corrinne E Grover, Azalea C Mendoza, Mark A Arick, Josef J Jareczek, Alexis G Leach, Daniel G Peterson, Jonathan F Wendel, Joshua A Udall

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in G3 (Bethesda, Md.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Thiruvarangan RamarajSchool of Computing, Jarvis College of Computing and Digital Media, DePaul University, Chicago, IL 60605, USA.ORCID 0000-0002-7333-1041
Corrinne E GroverEcology, Evolution, and Organismal Biology Department, Iowa State University, Ames, IA 50011, USA.ORCID 0000-0003-3878-5459
Azalea C MendozaSchool of Computing, Jarvis College of Computing and Digital Media, DePaul University, Chicago, IL 60605, USA.ORCID 0000-0002-3400-833X
Mark A ArickInstitute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, USA.ORCID 0000-0002-7207-3052
Josef J JareczekEcology, Evolution, and Organismal Biology Department, Iowa State University, Ames, IA 50011, USA.ORCID 0000-0001-5609-6281
Alexis G LeachEcology, Evolution, and Organismal Biology Department, Iowa State University, Ames, IA 50011, USA.ORCID 0000-0003-3664-9680
Daniel G PetersonInstitute for Genomics, Biocomputing and Biotechnology, Mississippi State University, Mississippi State, MS 39762, USA.ORCID 0000-0002-0274-5968
Jonathan F WendelEcology, Evolution, and Organismal Biology Department, Iowa State University, Ames, IA 50011, USA.ORCID 0000-0003-2258-5081
Joshua A UdallCrop Germplasm Research Unit, USDA/Agricultural Research Service, College Station, TX 77845, USA.ORCID 0000-0003-0978-4764
Iowa State University · USDePaul University · USMississippi State University · USAgricultural Research Service · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gossypium herbaceum is a species of cotton native to Africa and Asia that is one of the 2 domesticated diploids. Together with its sister-species G. arboreum, these A-genome taxa represent models of the extinct A-genome donor of modern polyploid cotton, which provide about 95% of cotton grown worldwide. As part of a larger effort to characterize variation and improve resources among diverse diploid and polyploid cotton genomes, we sequenced and assembled the genome of G. herbaceum cultivar (cv.) Wagad, representing the first domesticated accession for this species. This chromosome-level genome was generated using a combination of PacBio long-read technology, HiC, and Bionano optical mapping and compared to existing genome sequences in cotton. We compare the genome of this cultivar to the existing genome of wild G. herbaceum subspecies africanum to elucidate changes in the G. herbaceum genome concomitant with domestication and extend these analyses to gene expression using available RNA-seq. Our results demonstrate the utility of the G. herbaceum cv. Wagad genome in understanding domestication in the diploid species, which could inform modern breeding programs.

Indexed as

Genome, PlantGossypiumDomesticationPlant BreedingPolyploidycottongenome sequenceGossypium herbaceumWagad

Identifiers

PMID36454094
PMCPMC9911056
OpenAlexW4310564854

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.