Evidence map›Paper›PMID 36453994›Full record

ArticleNucleic acids research2022

DDX17 helicase promotes resolution of R-loop-mediated transcription-replication conflicts in human cells.

Barbora Boleslavska, Anna Oravetzova, Kaustubh Shukla, Zuzana Nascakova, Oluwakemi Ngozi Ibini, Zdenka Hasanova, Martin Andrs, Radhakrishnan Kanagaraj, Jana Dobrovolna, Pavel Janscak

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 4 countries.

Barbora BoleslavskaInstitute of Molecular Genetics of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague 4, Czech Republic.ORCID 0000-0002-5336-6829
Anna OravetzovaInstitute of Molecular Genetics of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague 4, Czech Republic.ORCID 0000-0003-2483-3739
Kaustubh ShuklaInstitute of Molecular Genetics of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague 4, Czech Republic.ORCID 0000-0001-7921-4519
Zuzana NascakovaInstitute of Molecular Genetics of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague 4, Czech Republic.ORCID 0000-0003-2035-8061
Oluwakemi Ngozi IbiniSchool of Life Sciences, University of Bedfordshire, Park Square, Luton LU1 3JU, UK.ORCID 0000-0002-9078-2012
Zdenka HasanovaInstitute of Molecular Genetics of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague 4, Czech Republic.ORCID 0000-0001-6047-1937
Martin AndrsInstitute of Molecular Genetics of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague 4, Czech Republic.ORCID 0000-0002-5850-1567
Radhakrishnan KanagarajSchool of Life Sciences, University of Bedfordshire, Park Square, Luton LU1 3JU, UK.ORCID 0000-0003-0906-5399
Jana DobrovolnaInstitute of Molecular Genetics of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague 4, Czech Republic.ORCID 0000-0003-2412-2080
Pavel JanscakInstitute of Molecular Genetics of the Czech Academy of Sciences, Videnska 1083, 142 20 Prague 4, Czech Republic.ORCID 0000-0002-1748-7789
Czech Academy of Sciences · CZUniversity of Bedfordshire · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

R-loops are three-stranded nucleic acid structures composed of an RNA:DNA hybrid and displaced DNA strand. These structures can halt DNA replication when formed co-transcriptionally in the opposite orientation to replication fork progression. A recent study has shown that replication forks stalled by co-transcriptional R-loops can be restarted by a mechanism involving fork cleavage by MUS81 endonuclease, followed by ELL-dependent reactivation of transcription, and fork religation by the DNA ligase IV (LIG4)/XRCC4 complex. However, how R-loops are eliminated to allow the sequential restart of transcription and replication in this pathway remains elusive. Here, we identified the human DDX17 helicase as a factor that associates with R-loops and counteracts R-loop-mediated replication stress to preserve genome stability. We show that DDX17 unwinds R-loops in vitro and promotes MUS81-dependent restart of R-loop-stalled forks in human cells in a manner dependent on its helicase activity. Loss of DDX17 helicase induces accumulation of R-loops and the formation of R-loop-dependent anaphase bridges and micronuclei. These findings establish DDX17 as a component of the MUS81-LIG4-ELL pathway for resolution of R-loop-mediated transcription-replication conflicts, which may be involved in R-loop unwinding.

Indexed as

DNA ReplicationR-Loop StructuresDEAD-box RNA HelicasesDNADNA HelicasesEndonucleasesHumansDDX17 protein, humanDEAD-box RNA HelicasesDNADNA HelicasesEndonucleases

Identifiers

PMID36453994
PMCPMC9757067
OpenAlexW4310570741

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.