Evidence map›Paper›PMID 36451894›Full record

ArticleApplied sciences (Basel, Switzerland)2022

Single Cell RNA-Sequence Analyses Reveal Uniquely Expressed Genes and Heterogeneous Immune Cell Involvement in the Rat Model of Intervertebral Disc Degeneration.

Milad Rohanifar, Sade W Clayton, Garrett W D Easson, Deepanjali S Patil, Frank Lee, Liufang Jing, Marcos N Barcellona, Julie E Speer, Jordan J Stivers, Simon Y Tang and 1 more

Open access · goldAbstract read
In one paragraph

Article in Applied sciences (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  5. Review
  6. Review
  7. Article
  8. The Effects of Vertebral Body Tethering on the Intervertebral Discs and Facet Joints: A Numerical Analysis.International journal for numerical methods in biomedical engineering · 2025
    Article
  9. Article
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  11. Article
  12. Review
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  16. Article
  17. Article
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  19. Article
  20. A longitudinal population-based study identifies THBS2 as a susceptibility gene for intervertebral disc degeneration.European spine journal : official publication of the European Spine Society, the European Spinal Deformity Society, and the European Section of the Cervical Spine Research Society · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Milad RohanifarDepartment of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA.
Sade W ClaytonDepartment of Orthopedic Surgery, Washington University School of Medicine, St. Louis, MO 63110, USA.ORCID 0000-0002-9798-2594
Garrett W D EassonDepartment of Orthopedic Surgery, Washington University School of Medicine, St. Louis, MO 63110, USA.ORCID 0000-0003-0078-6296
Deepanjali S PatilDepartment of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA.ORCID 0000-0002-2846-2624
Frank LeeDepartment of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA.
Liufang JingDepartment of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA.
Marcos N BarcellonaDepartment of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA.
Julie E SpeerDepartment of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA.
Jordan J StiversDepartment of Orthopedic Surgery, Washington University School of Medicine, St. Louis, MO 63110, USA.
Simon Y TangDepartment of Orthopedic Surgery, Washington University School of Medicine, St. Louis, MO 63110, USA.
Lori A SettonDepartment of Biomedical Engineering, Washington University in St. Louis, St. Louis, MO 63130, USA.
Washington University in St. Louis · US

Funding

Washington University Center for Cellular ImagingP30CA091842 · NCI · WASHINGTON UNIVERSITY · PI AIMEE S JAMES · 2001 to 2026
$128.0M
WU INSTITUTE OF CLINICAL AND TRANSLATIONAL SCIENCESUL1TR002345 · NCATS · WASHINGTON UNIVERSITY · PI William G. Powderly · 2017 to 2026
$97.8M
Resource Based Center for Musculoskeletal Biology and Medicine (Overall Application)P30AR074992 · NIAMS · WASHINGTON UNIVERSITY · PI MATTHEW J SILVA · 2019 to 2026
$6.8M
Intervertebral Disc Degeneration and Cross-Talk with the Nervous System - NOSI Diversity SupplementR01AR077678 · NIAMS · WASHINGTON UNIVERSITY · PI SETTON, LORI A., TANG, SIMON YUE-CHEONG · 2020 to 2024
$3.7M
Training Program in Rheumatic and Musculoskeletal Diseases ResearchT32AR069516 · NIAMS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI John D Mountz · 2016 to 2026
$2.6M
The role of physiologic and pathologic AGEs on RAGE signaling in IVD degenerationR01AR074441 · NIAMS · WASHINGTON UNIVERSITY · PI TANG, SIMON YUE-CHEONG · 2019 to 2024
$2.1M
TRAINING IN REGENERATIVE MEDICINET32EB028092 · NIBIB · WASHINGTON UNIVERSITY · PI Farshid Guilak · 2020 to 2026
$2.0M
Intra-Articular Delivery of Sustained Release NF-kB Antagonists In ArthritisR01AR070975 · NIAMS · WASHINGTON UNIVERSITY · PI SETTON, LORI A. · 2017 to 2021
$1.7M
NCATS NIH HHS UL1 TR002345NCI NIH HHS P30 CA091842NIAMS NIH HHS P30 AR074992NIAMS NIH HHS R01 AR070975NIAMS NIH HHS R01 AR074441NIAMS NIH HHS R01 AR077678NIAMS NIH HHS T32 AR069516NIBIB NIH HHS T32 EB028092
6 · The paper itself

Abstract

Intervertebral disc (IVD) degeneration is characterized by a loss of cellularity, and changes in cell-mediated activity that drives anatomic changes to IVD structure. In this study, we used single-cell RNA-sequencing analysis of degenerating tissues of the rat IVD following lumbar disc puncture. Two control, uninjured IVDs (L2-3, L3-4) and two degenerated, injured IVDs (L4-5, L5-6) from each animal were examined either at the two- or eight-week post-operative time points. The cells from these IVDs were extracted and transcriptionally profiled at the single-cell resolution. Unsupervised cluster analysis revealed the presence of four known cell types in both non-degenerative and degenerated IVDs based on previously established gene markers: IVD cells, endothelial cells, myeloid cells, and lymphoid cells. As a majority of cells were associated with the IVD cell cluster, sub-clustering was used to further identify the cell populations of the nucleus pulposus, inner and outer annulus fibrosus. The most notable difference between control and degenerated IVDs was the increase of myeloid and lymphoid cells in degenerated samples at two- and eight-weeks post-surgery. Differential gene expression analysis revealed multiple distinct cell types from the myeloid and lymphoid lineages, most notably macrophages and B lymphocytes, and demonstrated a high degree of immune specificity during degeneration. In addition to the heterogenous infiltrating immune cell populations in the degenerating IVD, the increased number of cells in the AF sub-cluster expressing

Indexed as

cell typeintervertebral disc degenerationsingle-cell RNA sequencing

Identifiers

PMID36451894
PMCPMC9706593
OpenAlexW4293791120

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.