ArticleScientific reports2022
The influence of genetic structure on phenotypic diversity in the Australian mango (Mangifera indica) gene pool.
Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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11 citing papers in PubMed, 15 citations in OpenAlex.
- Strategic global data integration to improve genomic prediction accuracy in tree breeding programs facing resource limitations, a case study in mango.Horticulture research · 2026Article
- Integrative genomics for mango genetics and breeding.Horticulture research · 2026Article
- Acclimation of mango (Mangifera indica cv. Calypso) to canopy light gradients-scaling from leaf to canopy.Tree physiology · 2025Article
- Comparative Genomics and Phylogenetics of Chloroplasts Reveal Lower Rates of Genetic Variation in Mango (Ecology and evolution · 2025Article
- A genome-wide association study identified SNP markers and candidate genes associated with morphometric fruit quality traits in mangoes.BMC genomics · 2025Article
- GWAS identifies a polyembryony locus in mango: development of KASP and PACE markers for marker-assisted breeding.Frontiers in plant science · 2025Article
- Increased genomic predictive ability in mango using GWAS-preselected variants and fixed-effect SNPs.Frontiers in plant science · 2025Article
- Genetic Diversity and Fingerprinting of 231 Mango Germplasm Using Genome SSR Markers.International journal of molecular sciences · 2024Article
- Genomic selection for crop improvement in fruits and vegetables: a systematic scoping review.Molecular breeding : new strategies in plant improvement · 2024Article
- Article
- Advancing tree genomics to future proof next generation orchard production.Frontiers in plant science · 2023Review
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Authors and funding
8 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Genomic selection is a promising breeding technique for tree crops to accelerate the development of new cultivars. However, factors such as genetic structure can create spurious associations between genotype and phenotype due to the shared history between populations with different trait values. Genetic structure can therefore reduce the accuracy of the genotype to phenotype map, a fundamental requirement of genomic selection models. Here, we employed 272 single nucleotide polymorphisms from 208 Mangifera indica accessions to explore whether the genetic structure of the Australian mango gene pool explained variation in trunk circumference, fruit blush colour and intensity. Multiple population genetic analyses indicate the presence of four genetic clusters and show that the most genetically differentiated cluster contains accessions imported from Southeast Asia (mainly those from Thailand). We find that genetic structure was strongly associated with three traits: trunk circumference, fruit blush colour and intensity in M. indica. This suggests that the history of these accessions could drive spurious associations between loci and key mango phenotypes in the Australian mango gene pool. Incorporating such genetic structure in associations between genotype and phenotype can improve the accuracy of genomic selection, which can assist the future development of new cultivars.
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