Evidence map›Paper›PMID 36450752›Full record

ArticleNature communications2022

Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential.

Jeroen Kneppers, Tesa M Severson, Joseph C Siefert, Pieter Schol, Stacey E P Joosten, Ivan Pak Lok Yu, Chia-Chi Flora Huang, Tunç Morova, Umut Berkay Altıntaş, Claudia Giambartolomei and 12 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
3.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

22 authors at 8 institutions in 6 countries.

Jeroen KneppersDivision of Oncogenomics, Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0002-6548-2480
Tesa M SeversonDivision of Oncogenomics, Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Joseph C SiefertDivision of Oncogenomics, Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Pieter ScholDivision of Oncogenomics, Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Stacey E P JoostenDivision of Oncogenomics, Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Ivan Pak Lok YuVancouver Prostate Centre, Department of Urologic Science, University of British Columbia, Vancouver, Canada.
Chia-Chi Flora HuangVancouver Prostate Centre, Department of Urologic Science, University of British Columbia, Vancouver, Canada.ORCID 0000-0002-2150-3139
Tunç MorovaVancouver Prostate Centre, Department of Urologic Science, University of British Columbia, Vancouver, Canada.
Umut Berkay AltıntaşSchool of Medicine, Koç University, Istanbul, Turkey.ORCID 0000-0002-0861-5013
Claudia GiambartolomeiCentral RNA Lab, Istituto Italiano di Tecnologia, Genova, Italy.ORCID 0000-0003-2786-1225
Ji-Heui SeoDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, USA.
Sylvan C BacaThe Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, USA.
Isa CarneiroDepartment of Pathology, Cancer Biology and Epigenetics Group, Portuguese Oncology Institute of Porto and Porto Comprehensive Cancer Center, Porto, Portugal.
Eldon EmberlyDepartment of Physics, Simon Fraser University, Burnaby, Canada.
Bogdan PasaniucDepartment of Pathology and Laboratory Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, USA.
Carmen JerónimoDepartment of Pathology, Cancer Biology and Epigenetics Group, Portuguese Oncology Institute of Porto and Porto Comprehensive Cancer Center, Porto, Portugal.
Rui HenriqueDepartment of Pathology, Cancer Biology and Epigenetics Group, Portuguese Oncology Institute of Porto and Porto Comprehensive Cancer Center, Porto, Portugal.ORCID 0000-0003-3171-4666
Matthew L FreedmanThe Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute, Boston, USA.ORCID 0000-0002-0151-1238
Lodewyk F A WesselsDivision of Molecular Carcinogenesis, Oncode Institute, Netherlands Cancer Institute, Amsterdam, the Netherlands.ORCID 0000-0002-1656-6995
Nathan A LackVancouver Prostate Centre, Department of Urologic Science, University of British Columbia, Vancouver, Canada.
Andries M BergmanDivision of Oncogenomics, Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands. a.bergman@nki.nl.ORCID 0000-0001-5223-2549
Wilbert ZwartDivision of Oncogenomics, Oncode Institute, Netherlands Cancer Institute, Amsterdam, The Netherlands. w.zwart@nki.nl.ORCID 0000-0002-9823-7289
The Netherlands Cancer Institute · NLInstituto Português de Oncologia Francisco Gentil · PTUniversity of British Columbia · CAUniversity of California, Los Angeles · USDana-Farber Cancer Institute · USKoç University · TROncode Institute · NLSimon Fraser University · CA

Funding

Physician Scientist Training in Cancer ResearchT32CA009172 · NCI · DANA-FARBER CANCER INSTITUTE · PI Jennifer R Brown, James A. DeCaprio · 1985 to 2026
$17.1M
NCI NIH HHS T32 CA009172
6 · The paper itself

Abstract

Androgen receptor (AR) drives prostate cancer (PCa) development and progression. AR chromatin binding profiles are highly plastic and form recurrent programmatic changes that differentiate disease stages, subtypes and patient outcomes. While prior studies focused on concordance between patient subgroups, inter-tumor heterogeneity of AR enhancer selectivity remains unexplored. Here we report high levels of AR chromatin binding heterogeneity in human primary prostate tumors, that overlap with heterogeneity observed in healthy prostate epithelium. Such heterogeneity has functional consequences, as somatic mutations converge on commonly-shared AR sites in primary over metastatic tissues. In contrast, less-frequently shared AR sites associate strongly with AR-driven gene expression, while such heterogeneous AR enhancer usage also distinguishes patients' outcome. These findings indicate that epigenetic heterogeneity in primary disease is directly informative for risk of biochemical relapse. Cumulatively, our results illustrate a high level of AR enhancer heterogeneity in primary PCa driving differential expression and clinical impact.

Indexed as

Prostatic NeoplasmsReceptors, AndrogenChromatinHumansMaleProstateRegulatory Sequences, Nucleic AcidChromatinReceptors, Androgen

Identifiers

PMID36450752
PMCPMC9712620
OpenAlexW4310639174

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.